Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 15580 and 15581 are separated by 309 nucleotides15581 and 15582 are separated by 137 nucleotides15582 and 15583 are separated by 314 nucleotides15583 and 15584 are separated by 209 nucleotides mRNA_7212: 15580 - KOG3764 Vesicular amine transporter, at 1,142,497 to 1,144,513 15580 mRNA_7213: 15581 - K14636 SLC18A3, VACHT MFS transporter, DHA1 family, solute carrier family 18 (vesicular acetylcholine transporter), member 3, at 1,144,823 to 1,146,874 15581 mRNA_7214: 15582 - K17792 TIM54 mitochondrial import inner membrane translocase subunit TIM54, at 1,147,012 to 1,148,920 15582 mRNA_7215: 15583 - K10253 K10253 DOPA 4,5-dioxygenase, at 1,149,235 to 1,150,219 15583 mRNA_7216: 15584 - K01535 PMA1, PMA2 H+-transporting ATPase, at 1,150,429 to 1,154,847 15584
Group Condition mRNA_7212 mRNA_7213 mRNA_7214 mRNA_7215 mRNA_7216
15580 15581 15582 15583 15584
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 -0.3 N.D. -0.1 -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 -0.2 N.D. +0.1 -0.2
growth on oleic acid YNB Oleic Acid +0.3 -0.4 N.D. -0.3 +0.1
auxotrophy YNB Glucose 75mM Methionine -0.0 -0.0 N.D. -0.4 +0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.3 -0.3 N.D. -0.3 +0.1
facs on lipid accumulation Sorted Low BODIPY Gate +0.1 +0.0 N.D. -0.2 -0.2
growth on ypd YPD +0.1 -0.3 N.D. +0.2 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 +0.1 N.D. +0.1 -0.2
ypd buoyancy 40 hrs No Buoyancy Separation -0.0 -0.2 N.D. +0.0 +0.2
auxotrophy YNB Glucose 75mM Arginine -0.0 +0.1 N.D. -0.1 +0.1
ypd buoyancy 40 hrs Low Buoyancy -0.1 +0.0 N.D. -0.0 +0.1
ypd buoyancy 40 hrs High Buoyancy -0.1 -0.1 N.D. +0.1 +0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.3 +0.4 N.D. -0.5 -0.1
auxotrophy Dropout Complete +0.1 -0.1 N.D. +0.0 +0.1
growth on oleic acid YNB Glucose +0.2 -0.1 N.D. +0.0 +0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.2 -0.1 N.D. +0.3 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid +0.3 +0.0 N.D. -0.2 +0.1
auxotrophy YNB Glucose +0.1 -0.1 N.D. +0.1 +0.2
ypd buoyancy 40 hrs Median Buoyancy +0.1 +0.2 N.D. -0.0 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.0 +0.4 N.D. -0.1 +0.1
growth on ricinoleic acid YNB Glucose +0.3 +0.3 N.D. -0.1 +0.2
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