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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15580 and 15581 are separated by 309 nucleotides
15581 and 15582 are separated by 137 nucleotides
15582 and 15583 are separated by 314 nucleotides
15583 and 15584 are separated by 209 nucleotides
mRNA_7212: 15580 - KOG3764 Vesicular amine transporter, at 1,142,497 to 1,144,513
15580
mRNA_7213: 15581 - K14636 SLC18A3, VACHT MFS transporter, DHA1 family, solute carrier family 18 (vesicular acetylcholine transporter), member 3, at 1,144,823 to 1,146,874
15581
mRNA_7214: 15582 - K17792 TIM54 mitochondrial import inner membrane translocase subunit TIM54, at 1,147,012 to 1,148,920
15582
mRNA_7215: 15583 - K10253 K10253 DOPA 4,5-dioxygenase, at 1,149,235 to 1,150,219
15583
mRNA_7216: 15584 - K01535 PMA1, PMA2 H+-transporting ATPase, at 1,150,429 to 1,154,847
15584
Group
Condition
mRNA
_7212
mRNA
_7213
mRNA
_7214
mRNA
_7215
mRNA
_7216
15580
15581
15582
15583
15584
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.3
N.D.
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.2
N.D.
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
+0.3
-0.4
N.D.
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.0
N.D.
-0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.3
N.D.
-0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.0
N.D.
-0.2
-0.2
growth on ypd
YPD
+0.1
-0.3
N.D.
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
N.D.
+0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.2
N.D.
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.1
N.D.
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
N.D.
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
N.D.
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.4
N.D.
-0.5
-0.1
auxotrophy
Dropout Complete
+0.1
-0.1
N.D.
+0.0
+0.1
growth on oleic acid
YNB Glucose
+0.2
-0.1
N.D.
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
N.D.
+0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.0
N.D.
-0.2
+0.1
auxotrophy
YNB Glucose
+0.1
-0.1
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
N.D.
-0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.4
N.D.
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
+0.3
N.D.
-0.1
+0.2
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