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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15583 and 15584 are separated by 209 nucleotides
15584 and 15585 are separated by 549 nucleotides
15585 and 15586 are separated by 191 nucleotides
15586 and 15587 are separated by 87 nucleotides
mRNA_7215: 15583 - K10253 K10253 DOPA 4,5-dioxygenase, at 1,149,235 to 1,150,219
15583
mRNA_7216: 15584 - K01535 PMA1, PMA2 H+-transporting ATPase, at 1,150,429 to 1,154,847
15584
mRNA_7217: 15585 - KOG3309 Ferredoxin, at 1,155,397 to 1,156,419
15585
mRNA_7218: 15586 - K20405 NPRL2 nitrogen permease regulator 2-like protein, at 1,156,611 to 1,158,564
15586
mRNA_7219: 15587 - K15053 CHMP7 charged multivesicular body protein 7, at 1,158,652 to 1,160,281
15587
Group
Condition
mRNA
_7215
mRNA
_7216
mRNA
_7217
mRNA
_7218
mRNA
_7219
15583
15584
15585
15586
15587
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.1
N.D.
-1.5
-1.9
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.1
N.D.
-0.9
-1.3
auxotrophy
Dropout Complete
+0.0
+0.1
N.D.
-0.7
-2.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.1
N.D.
-0.4
-1.9
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.2
N.D.
+0.2
-2.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.2
N.D.
-0.5
-1.2
growth on oleic acid
YNB Glucose
+0.0
+0.0
N.D.
-1.1
-0.8
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
N.D.
-0.2
-1.1
growth on oleic acid
YNB Oleic Acid
-0.3
+0.1
N.D.
-0.6
-0.5
growth on ricinoleic acid
YNB Glucose
-0.1
+0.2
N.D.
-0.2
-1.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
N.D.
+0.2
-1.4
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.1
N.D.
-0.9
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
N.D.
+0.2
-1.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
N.D.
+0.2
-1.1
auxotrophy
YNB Glucose
+0.1
+0.2
N.D.
-0.1
-0.8
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
N.D.
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.2
N.D.
-0.7
+1.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
N.D.
-0.5
+1.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.2
N.D.
-0.9
+2.7
growth on ypd
YPD
+0.2
-0.1
N.D.
+1.7
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.1
N.D.
-0.1
+2.4
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