Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 15587 and 15588 are separated by 95 nucleotides15588 and 15589 are separated by 1208 nucleotides15589 and 15590 are separated by 349 nucleotides15590 and 15591 are separated by 273 nucleotides mRNA_7219: 15587 - K15053 CHMP7 charged multivesicular body protein 7, at 1,158,652 to 1,160,281 15587 mRNA_7220: 15588 - HMMPfam-zinc-RING finger domain-PF14634,ProSitePatterns-Zinc finger RING-type signature.-PS00518,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF57850, at 1,160,377 to 1,161,832 15588 mRNA_7221: 15589 - K02133 ATPeF1B, ATP5B, ATP2 F-type H+-transporting ATPase subunit beta, at 1,163,041 to 1,165,362 15589 mRNA_7222: 15590 - KOG1572 Predicted protein tyrosine phosphatase, at 1,165,712 to 1,166,653 15590 mRNA_7223: 15591 - K19983 EXOC1, SEC3 exocyst complex component 1, at 1,166,927 to 1,171,458 15591
Group Condition mRNA_7219 mRNA_7220 mRNA_7221 mRNA_7222 mRNA_7223
15587 15588 15589 15590 15591
facs on lipid accumulation Sorted High BODIPY Gate -1.3 -1.0 N.D. +0.0 -2.1
facs on lipid accumulation Sorted No BODIPY Gate -1.9 +0.3 N.D. +0.1 -2.4
ypd buoyancy 40 hrs No Buoyancy Separation -2.7 -0.4 N.D. +0.1 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate -1.2 -0.9 N.D. +0.5 -1.0
ypd buoyancy 40 hrs Low Buoyancy -1.2 -0.5 N.D. -0.3 +0.1
growth on ricinoleic acid YNB Ricinoleic Acid -1.9 +0.5 N.D. -0.2 +0.2
growth on oleic acid YNB Glucose -0.8 +0.2 N.D. -0.4 -0.4
growth on ricinoleic acid YNB Methylricinoleic Acid -1.1 +0.6 N.D. -0.3 -0.4
ypd buoyancy 40 hrs Median Buoyancy -1.4 +0.1 N.D. +0.2 +0.0
auxotrophy YNB Glucose 75mM Arginine -1.1 +0.1 N.D. +0.1 -0.2
growth on oleic acid YNB Oleic Acid -0.5 +0.0 N.D. -0.4 -0.2
growth on ricinoleic acid YNB Glucose -1.0 +0.4 N.D. -0.2 -0.1
auxotrophy Dropout Complete -2.2 +0.5 N.D. +0.5 +0.2
auxotrophy YNB Glucose -0.8 -0.1 N.D. +0.1 +0.0
ypd buoyancy 40 hrs High Buoyancy -0.4 +0.2 N.D. +0.1 -0.1
auxotrophy YNB Glucose 75mM Methionine +0.1 +0.2 N.D. +0.0 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +1.9 +0.0 N.D. +0.0 -1.0
growth on ypd YPD +0.1 +0.5 N.D. +0.4 +0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy +2.7 +0.1 N.D. +0.1 -1.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +1.8 +0.6 N.D. -0.0 -0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy +2.4 +0.4 N.D. -0.2 -0.3
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