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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15587 and 15588 are separated by 95 nucleotides
15588 and 15589 are separated by 1208 nucleotides
15589 and 15590 are separated by 349 nucleotides
15590 and 15591 are separated by 273 nucleotides
mRNA_7219: 15587 - K15053 CHMP7 charged multivesicular body protein 7, at 1,158,652 to 1,160,281
15587
mRNA_7220: 15588 - HMMPfam-zinc-RING finger domain-PF14634,ProSitePatterns-Zinc finger RING-type signature.-PS00518,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF57850, at 1,160,377 to 1,161,832
15588
mRNA_7221: 15589 - K02133 ATPeF1B, ATP5B, ATP2 F-type H+-transporting ATPase subunit beta, at 1,163,041 to 1,165,362
15589
mRNA_7222: 15590 - KOG1572 Predicted protein tyrosine phosphatase, at 1,165,712 to 1,166,653
15590
mRNA_7223: 15591 - K19983 EXOC1, SEC3 exocyst complex component 1, at 1,166,927 to 1,171,458
15591
Group
Condition
mRNA
_7219
mRNA
_7220
mRNA
_7221
mRNA
_7222
mRNA
_7223
15587
15588
15589
15590
15591
facs on lipid accumulation
Sorted High BODIPY Gate
-1.3
-1.0
N.D.
+0.0
-2.1
facs on lipid accumulation
Sorted No BODIPY Gate
-1.9
+0.3
N.D.
+0.1
-2.4
ypd buoyancy
40 hrs No Buoyancy Separation
-2.7
-0.4
N.D.
+0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.2
-0.9
N.D.
+0.5
-1.0
ypd buoyancy
40 hrs Low Buoyancy
-1.2
-0.5
N.D.
-0.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.9
+0.5
N.D.
-0.2
+0.2
growth on oleic acid
YNB Glucose
-0.8
+0.2
N.D.
-0.4
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.1
+0.6
N.D.
-0.3
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-1.4
+0.1
N.D.
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-1.1
+0.1
N.D.
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.5
+0.0
N.D.
-0.4
-0.2
growth on ricinoleic acid
YNB Glucose
-1.0
+0.4
N.D.
-0.2
-0.1
auxotrophy
Dropout Complete
-2.2
+0.5
N.D.
+0.5
+0.2
auxotrophy
YNB Glucose
-0.8
-0.1
N.D.
+0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.2
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.2
N.D.
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.9
+0.0
N.D.
+0.0
-1.0
growth on ypd
YPD
+0.1
+0.5
N.D.
+0.4
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+2.7
+0.1
N.D.
+0.1
-1.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.8
+0.6
N.D.
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+2.4
+0.4
N.D.
-0.2
-0.3
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