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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15592 and 15593 are separated by 736 nucleotides
15593 and 15594 are separated by 582 nucleotides
15594 and 15595 are separated by 235 nucleotides
15595 and 15596 are separated by 609 nucleotides
mRNA_7224: 15592 - K15564 CTK2 CTD kinase subunit beta, at 1,171,595 to 1,173,622
15592
mRNA_7225: 15593 - Hypothetical Protein, at 1,174,359 to 1,174,926
15593
mRNA_7226: 15594 - HMMPfam-Demethylmenaquinone methyltransferase-PF03737,SUPERFAMILY--SSF89562, at 1,175,509 to 1,176,564
15594
mRNA_7227: 15595 - K03239 EIF2B1 translation initiation factor eIF-2B subunit alpha, at 1,176,800 to 1,178,543
15595
mRNA_7228: 15596 - KOG1674 Cyclin, at 1,179,153 to 1,180,280
15596
Group
Condition
mRNA
_7224
mRNA
_7225
mRNA
_7226
mRNA
_7227
mRNA
_7228
15592
15593
15594
15595
15596
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.4
-0.3
-1.3
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.6
-0.5
-0.9
-0.5
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
-0.2
-0.7
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.7
-0.5
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.4
-0.2
+0.3
+0.0
growth on oleic acid
YNB Glucose
N.D.
+0.2
-0.3
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.0
-0.7
+0.2
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.5
+0.2
-0.6
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.6
-0.1
-0.9
+0.7
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+1.2
-0.8
+0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.7
-0.2
+0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.8
+0.2
-0.2
-0.2
auxotrophy
YNB Glucose
N.D.
+0.0
-0.6
+0.6
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.7
+0.1
-0.9
+0.8
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.5
-0.1
+0.3
-0.1
auxotrophy
Dropout Complete
N.D.
+0.1
-0.3
+0.3
+0.6
growth on ypd
YPD
N.D.
+0.8
-0.6
+0.0
+0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.1
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.4
-0.1
+0.0
+0.7
growth on ricinoleic acid
YNB Glucose
N.D.
+0.5
+0.2
+0.7
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.9
+0.5
+0.3
-0.2
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