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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15593 and 15594 are separated by 582 nucleotides
15594 and 15595 are separated by 235 nucleotides
15595 and 15596 are separated by 609 nucleotides
15596 and 15597 are separated by 434 nucleotides
mRNA_7225: 15593 - Hypothetical Protein, at 1,174,359 to 1,174,926
15593
mRNA_7226: 15594 - HMMPfam-Demethylmenaquinone methyltransferase-PF03737,SUPERFAMILY--SSF89562, at 1,175,509 to 1,176,564
15594
mRNA_7227: 15595 - K03239 EIF2B1 translation initiation factor eIF-2B subunit alpha, at 1,176,800 to 1,178,543
15595
mRNA_7228: 15596 - KOG1674 Cyclin, at 1,179,153 to 1,180,280
15596
mRNA_7229: 15597 - Hypothetical Protein, at 1,180,715 to 1,181,387
15597
Group
Condition
mRNA
_7225
mRNA
_7226
mRNA
_7227
mRNA
_7228
mRNA
_7229
15593
15594
15595
15596
15597
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
-0.5
-0.9
-0.5
-2.2
growth on oleic acid
YNB Oleic Acid
-0.0
-0.2
-0.7
-0.1
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.7
+0.2
+0.5
-1.4
ypd buoyancy
40 hrs High Buoyancy
+0.7
-0.2
+0.1
-0.2
-1.1
growth on oleic acid
YNB Glucose
+0.2
-0.3
+0.1
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.3
-1.3
+0.0
+1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.2
-0.6
+0.0
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.2
+0.3
+0.0
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
+0.2
+0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
+0.2
-0.2
-0.2
+0.4
growth on ypd
YPD
+0.8
-0.6
+0.0
+0.4
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.7
-0.5
+0.3
+1.9
facs on lipid accumulation
Sorted No BODIPY Gate
+1.2
-0.8
+0.2
-0.2
+0.8
ypd buoyancy
40 hrs Low Buoyancy
+0.5
-0.1
+0.3
-0.1
+0.8
auxotrophy
Dropout Complete
+0.1
-0.3
+0.3
+0.6
+1.0
growth on ricinoleic acid
YNB Glucose
+0.5
+0.2
+0.7
+0.1
+0.5
auxotrophy
YNB Glucose
+0.0
-0.6
+0.6
+0.5
+1.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.9
+0.5
+0.3
-0.2
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
+0.1
-0.9
+0.8
+2.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
-0.1
-0.9
+0.7
+2.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.1
+0.0
+0.7
+3.6
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mRNA_7226
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mRNA_7227
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mRNA_7229
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