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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15596 and 15597 are separated by 434 nucleotides
15597 and 15598 are separated by 240 nucleotides
15598 and 15599 are separated by 186 nucleotides
15599 and 15600 are separated by 947 nucleotides
mRNA_7228: 15596 - KOG1674 Cyclin, at 1,179,153 to 1,180,280
15596
mRNA_7229: 15597 - Hypothetical Protein, at 1,180,715 to 1,181,387
15597
mRNA_7230: 15598 - K07019 K07019 uncharacterized protein, at 1,181,628 to 1,183,243
15598
mRNA_7231: 15599 - Hypothetical Protein, at 1,183,430 to 1,185,124
15599
mRNA_7232: 15600 - K10572 IPPK inositol-pentakisphosphate 2-kinase, at 1,186,072 to 1,187,585
15600
Group
Condition
mRNA
_7228
mRNA
_7229
mRNA
_7230
mRNA
_7231
mRNA
_7232
15596
15597
15598
15599
15600
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.3
-3.0
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-2.2
+0.2
+0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
-1.1
-0.2
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.6
+0.2
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-1.4
+0.3
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.4
-0.2
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
-0.2
-0.1
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.1
+0.2
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+1.0
-0.7
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.5
-0.5
+0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.8
-0.1
+0.1
N.D.
growth on ypd
YPD
+0.4
+0.3
-0.0
+0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.8
+0.1
+0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.8
+0.3
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.6
+0.3
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+1.9
-0.3
-0.1
N.D.
auxotrophy
Dropout Complete
+0.6
+1.0
+0.3
+0.3
N.D.
auxotrophy
YNB Glucose
+0.5
+1.5
+0.5
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.8
+2.2
-0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
+2.7
+0.2
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
+3.6
-0.5
-0.2
N.D.
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