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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15607 and 15608 are separated by 354 nucleotides
15608 and 15609 are separated by 155 nucleotides
15609 and 15610 are separated by 214 nucleotides
15610 and 15611 are separated by 1063 nucleotides
mRNA_7239: 15607 - Hypothetical Protein, at 1,198,492 to 1,200,248
15607
mRNA_7240: 15608 - Hypothetical Protein, at 1,200,603 to 1,202,744
15608
mRNA_7241: 15609 - K01265 map methionyl aminopeptidase, at 1,202,900 to 1,205,057
15609
mRNA_7242: 15610 - K01265 map methionyl aminopeptidase, at 1,205,272 to 1,206,934
15610
mRNA_7243: 15611 - Hypothetical Protein, at 1,207,998 to 1,209,411
15611
Group
Condition
mRNA
_7239
mRNA
_7240
mRNA
_7241
mRNA
_7242
mRNA
_7243
15607
15608
15609
15610
15611
growth on ricinoleic acid
YNB Glucose
-0.1
-0.4
-0.5
-0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.2
-1.1
+0.0
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.3
-0.6
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.2
-0.4
-0.4
-0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
-0.6
-0.0
-0.2
growth on oleic acid
YNB Glucose
+0.0
-0.0
-0.3
-0.5
+0.0
growth on oleic acid
YNB Oleic Acid
-0.4
+0.2
-0.5
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.2
-0.4
-0.0
-0.3
growth on ypd
YPD
+0.1
+0.1
-0.5
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.0
-0.6
+0.1
-0.3
auxotrophy
Dropout Complete
+0.3
-0.0
-0.5
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.0
-0.4
+0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.2
-0.1
-0.5
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.2
-0.5
-0.0
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.5
-0.1
-0.5
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.0
-0.7
-0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
-0.3
-0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.2
-0.1
-0.1
+0.2
auxotrophy
YNB Glucose
+0.3
+0.2
-0.6
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.1
+0.0
-0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
+0.6
-0.3
-0.3
-0.2
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