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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15608 and 15609 are separated by 155 nucleotides
15609 and 15610 are separated by 214 nucleotides
15610 and 15611 are separated by 1063 nucleotides
15611 and 15612 are separated by 353 nucleotides
mRNA_7240: 15608 - Hypothetical Protein, at 1,200,603 to 1,202,744
15608
mRNA_7241: 15609 - K01265 map methionyl aminopeptidase, at 1,202,900 to 1,205,057
15609
mRNA_7242: 15610 - K01265 map methionyl aminopeptidase, at 1,205,272 to 1,206,934
15610
mRNA_7243: 15611 - Hypothetical Protein, at 1,207,998 to 1,209,411
15611
mRNA_7244: 15612 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 1,209,765 to 1,211,262
15612
Group
Condition
mRNA
_7240
mRNA
_7241
mRNA
_7242
mRNA
_7243
mRNA
_7244
15608
15609
15610
15611
15612
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-1.1
+0.0
-0.4
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.4
-0.4
-0.6
-0.1
growth on ricinoleic acid
YNB Glucose
-0.4
-0.5
-0.2
-0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.6
-0.1
-0.1
+0.2
growth on oleic acid
YNB Glucose
-0.0
-0.3
-0.5
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.4
-0.0
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.6
-0.0
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.6
+0.1
-0.3
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.7
-0.0
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.5
-0.0
-0.0
-0.0
growth on ypd
YPD
+0.1
-0.5
-0.1
-0.2
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.1
-0.5
-0.1
-0.1
auxotrophy
Dropout Complete
-0.0
-0.5
+0.1
-0.3
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
-0.5
+0.3
+0.3
growth on oleic acid
YNB Oleic Acid
+0.2
-0.5
-0.2
+0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
-0.1
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
-0.3
-0.3
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.3
-0.1
+0.0
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.4
+0.3
-0.1
+0.4
auxotrophy
YNB Glucose
+0.2
-0.6
+0.2
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.0
-0.1
+0.0
+0.4
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