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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15610 and 15611 are separated by 1063 nucleotides
15611 and 15612 are separated by 353 nucleotides
15612 and 15613 are separated by 432 nucleotides
15613 and 15614 are separated by 72 nucleotides
mRNA_7242: 15610 - K01265 map methionyl aminopeptidase, at 1,205,272 to 1,206,934
15610
mRNA_7243: 15611 - Hypothetical Protein, at 1,207,998 to 1,209,411
15611
mRNA_7244: 15612 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 1,209,765 to 1,211,262
15612
mRNA_7245: 15613 - K17972 NAA20, NAT3 N-terminal acetyltransferase B complex catalytic subunit, at 1,211,695 to 1,212,788
15613
mRNA_7246: 15614 - Hypothetical Protein, at 1,212,861 to 1,214,455
15614
Group
Condition
mRNA
_7242
mRNA
_7243
mRNA
_7244
mRNA
_7245
mRNA
_7246
15610
15611
15612
15613
15614
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.6
-0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.3
-0.0
N.D.
+0.0
growth on oleic acid
YNB Glucose
-0.5
+0.0
+0.1
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.0
-0.0
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.1
-0.1
N.D.
+0.5
growth on ricinoleic acid
YNB Glucose
-0.2
-0.3
+0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.3
+0.3
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.4
+0.2
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.2
+0.1
N.D.
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
+0.2
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
-0.2
+0.2
+0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.0
+0.4
N.D.
-0.1
growth on ypd
YPD
-0.1
-0.2
+0.3
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.3
+0.3
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.2
+0.4
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.3
+0.1
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
+0.3
N.D.
+0.3
auxotrophy
Dropout Complete
+0.1
-0.3
+0.4
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.1
+0.4
N.D.
+0.0
auxotrophy
YNB Glucose
+0.2
+0.1
+0.4
N.D.
+0.4
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