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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15611 and 15612 are separated by 353 nucleotides
15612 and 15613 are separated by 432 nucleotides
15613 and 15614 are separated by 72 nucleotides
15614 and 15615 are separated by 146 nucleotides
mRNA_7243: 15611 - Hypothetical Protein, at 1,207,998 to 1,209,411
15611
mRNA_7244: 15612 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 1,209,765 to 1,211,262
15612
mRNA_7245: 15613 - K17972 NAA20, NAT3 N-terminal acetyltransferase B complex catalytic subunit, at 1,211,695 to 1,212,788
15613
mRNA_7246: 15614 - Hypothetical Protein, at 1,212,861 to 1,214,455
15614
mRNA_7247: 15615 - Hypothetical Protein, at 1,214,602 to 1,216,220
15615
Group
Condition
mRNA
_7243
mRNA
_7244
mRNA
_7245
mRNA
_7246
mRNA
_7247
15611
15612
15613
15614
15615
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.1
N.D.
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.3
N.D.
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.0
N.D.
+0.0
+0.1
growth on ricinoleic acid
YNB Glucose
-0.3
+0.2
N.D.
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.0
N.D.
-0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.2
N.D.
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.4
N.D.
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
N.D.
+0.1
-0.2
growth on oleic acid
YNB Glucose
+0.0
+0.1
N.D.
+0.0
+0.1
auxotrophy
Dropout Complete
-0.3
+0.4
N.D.
+0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
N.D.
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.4
N.D.
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.4
N.D.
+0.3
-0.0
growth on ypd
YPD
-0.2
+0.3
N.D.
+0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.2
N.D.
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.1
N.D.
+0.5
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.3
N.D.
+0.3
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
N.D.
+0.5
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.1
N.D.
+0.1
+0.2
auxotrophy
YNB Glucose
+0.1
+0.4
N.D.
+0.4
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.3
N.D.
+0.2
+0.3
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