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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15622 and 15623 are separated by 53 nucleotides
15623 and 15624 are separated by 299 nucleotides
15624 and 15625 are separated by 93 nucleotides
15625 and 15626 are separated by 684 nucleotides
mRNA_7254: 15622 - Hypothetical Protein, at 1,226,042 to 1,227,561
15622
mRNA_7255: 15623 - Hypothetical Protein, at 1,227,615 to 1,231,158
15623
mRNA_7256: 15624 - BLAST protein kinase-like domain containing protein [Rh..., at 1,231,458 to 1,233,472
15624
mRNA_7257: 15625 - ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 1,233,566 to 1,236,513
15625
mRNA_7258: 15626 - K11378 SAS3 histone acetyltransferase SAS3, at 1,237,198 to 1,241,619
15626
Group
Condition
mRNA
_7254
mRNA
_7255
mRNA
_7256
mRNA
_7257
mRNA
_7258
15622
15623
15624
15625
15626
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
-0.4
-0.3
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.1
-0.2
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
-0.2
-0.3
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.1
+0.1
-0.4
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.1
-0.2
-0.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.1
-0.3
+0.1
+0.1
growth on ypd
YPD
-0.3
-0.1
+0.1
+0.1
-0.4
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
+0.0
-0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.3
-0.1
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.0
-0.0
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
-0.2
-0.1
+0.1
growth on oleic acid
YNB Glucose
-0.0
+0.1
-0.0
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.2
-0.0
+0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.2
+0.2
+0.2
-0.2
auxotrophy
Dropout Complete
+0.2
-0.1
-0.0
+0.1
-0.4
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
-0.0
+0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
+0.1
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.0
-0.2
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
-0.1
-0.0
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.0
-0.0
+0.1
-0.1
auxotrophy
YNB Glucose
+0.3
-0.2
+0.0
+0.2
-0.1
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