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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15625 and 15626 are separated by 684 nucleotides
15626 and 15627 are separated by 197 nucleotides
15627 and 15628 are separated by 511 nucleotides
15628 and 15629 are separated by 1296 nucleotides
mRNA_7257: 15625 - ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 1,233,566 to 1,236,513
15625
mRNA_7258: 15626 - K11378 SAS3 histone acetyltransferase SAS3, at 1,237,198 to 1,241,619
15626
mRNA_7259: 15627 - K15188 CCNT cyclin T, at 1,241,817 to 1,243,103
15627
mRNA_7260: 15628 - K09230 SCAN SCAN domain-containing zinc finger protein, at 1,243,615 to 1,245,304
15628
mRNA_7261: 15629 - SUPERFAMILY--SSF51735, at 1,246,601 to 1,248,053
15629
Group
Condition
mRNA
_7257
mRNA
_7258
mRNA
_7259
mRNA
_7260
mRNA
_7261
15625
15626
15627
15628
15629
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.4
N.D.
-0.1
-0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.3
N.D.
-0.0
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.2
N.D.
-0.2
-0.4
growth on ricinoleic acid
YNB Glucose
-0.0
-0.3
N.D.
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.6
N.D.
+0.1
+0.3
auxotrophy
Dropout Complete
+0.1
-0.4
N.D.
+0.2
-0.4
growth on ypd
YPD
+0.1
-0.4
N.D.
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.3
N.D.
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.3
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
N.D.
+0.2
-0.3
growth on oleic acid
YNB Glucose
+0.1
-0.4
N.D.
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.2
N.D.
+0.0
+0.3
auxotrophy
YNB Glucose
+0.2
-0.1
N.D.
+0.3
-0.3
growth on oleic acid
YNB Oleic Acid
+0.0
-0.1
N.D.
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
N.D.
+0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.1
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.2
N.D.
+0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
N.D.
+0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.1
N.D.
-0.1
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.1
N.D.
+0.6
+0.8
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
N.D.
+0.1
+0.7
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