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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15627 and 15628 are separated by 511 nucleotides
15628 and 15629 are separated by 1296 nucleotides
15629 and 15630 are separated by 647 nucleotides
15630 and 15631 are separated by 573 nucleotides
mRNA_7259: 15627 - K15188 CCNT cyclin T, at 1,241,817 to 1,243,103
15627
mRNA_7260: 15628 - K09230 SCAN SCAN domain-containing zinc finger protein, at 1,243,615 to 1,245,304
15628
mRNA_7261: 15629 - SUPERFAMILY--SSF51735, at 1,246,601 to 1,248,053
15629
mRNA_7262: 15630 - HMMPfam-Peptidase M50B-like-PF13398, at 1,248,701 to 1,250,915
15630
mRNA_7263: 15631 - K00615 E2.2.1.1, tktA, tktB transketolase, at 1,251,489 to 1,254,335
15631
Group
Condition
mRNA
_7259
mRNA
_7260
mRNA
_7261
mRNA
_7262
mRNA
_7263
15627
15628
15629
15630
15631
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
-0.5
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.0
-0.6
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
-0.4
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
-0.3
-0.1
N.D.
growth on ypd
YPD
N.D.
-0.2
+0.0
-0.1
N.D.
auxotrophy
Dropout Complete
N.D.
+0.2
-0.4
+0.0
N.D.
auxotrophy
YNB Glucose
N.D.
+0.3
-0.3
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
-0.3
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.1
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
-0.1
-0.1
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.2
-0.0
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
-0.1
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
+0.3
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
-0.0
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
+0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.3
+0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
+0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
+0.2
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.7
+0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
+0.6
+0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.6
+0.8
-0.2
N.D.
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