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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15639 and 15640 are separated by 1709 nucleotides
15640 and 15641 are separated by 449 nucleotides
15641 and 15642 are separated by 249 nucleotides
15642 and 15643 are separated by 671 nucleotides
mRNA_7271: 15639 - HMMPfam-TEA/ATTS domain family-PF01285,ProSiteProfiles-TEA domain profile.-PS51088, at 1,268,325 to 1,269,363
15639
mRNA_7272: 15640 - Hypothetical Protein, at 1,271,073 to 1,272,368
15640
mRNA_7273: 15641 - K15859 SKN7 osomolarity two-component system, response regulator SKN7, at 1,272,818 to 1,275,702
15641
mRNA_7274: 15642 - Hypothetical Protein, at 1,275,952 to 1,277,293
15642
mRNA_7275: 15643 - HMMPfam-Uncharacterized conserved protein (DUF2346)-PF09803, at 1,277,965 to 1,278,426
15643
Group
Condition
mRNA
_7271
mRNA
_7272
mRNA
_7273
mRNA
_7274
mRNA
_7275
15639
15640
15641
15642
15643
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.9
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.1
-1.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
-0.6
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.2
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.1
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
+0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
+0.2
N.D.
N.D.
growth on ypd
YPD
+0.3
-0.0
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.2
+0.4
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.2
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
+0.3
+0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
+0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
+0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
+0.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.2
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose
+0.0
+0.2
+0.5
N.D.
N.D.
auxotrophy
Dropout Complete
+0.2
+0.0
+0.9
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.4
+0.8
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.3
+0.7
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.3
+1.8
N.D.
N.D.
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