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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15642 and 15643 are separated by 671 nucleotides
15643 and 15644 are separated by 85 nucleotides
15644 and 15645 are separated by 272 nucleotides
15645 and 15646 are separated by 235 nucleotides
mRNA_7274: 15642 - Hypothetical Protein, at 1,275,952 to 1,277,293
15642
mRNA_7275: 15643 - HMMPfam-Uncharacterized conserved protein (DUF2346)-PF09803, at 1,277,965 to 1,278,426
15643
mRNA_7276: 15644 - K17806 PAM17, TIM23 mitochondrial import inner membrane translocase subunit TIM23, at 1,278,512 to 1,279,383
15644
mRNA_7277: 15645 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 1,279,656 to 1,282,236
15645
mRNA_7278: 15646 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1,282,472 to 1,285,388
15646
Group
Condition
mRNA
_7274
mRNA
_7275
mRNA
_7276
mRNA
_7277
mRNA
_7278
15642
15643
15644
15645
15646
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-1.3
-0.5
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.4
-0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.4
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.3
+0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.0
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.5
-0.0
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.0
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.2
-0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.4
+0.3
+0.0
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.1
+0.0
+0.0
growth on ypd
YPD
N.D.
N.D.
-0.1
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
+0.0
+0.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.1
+0.3
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.3
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.1
+0.2
-0.0
auxotrophy
Dropout Complete
N.D.
N.D.
+0.2
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.1
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
+0.2
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.0
+0.4
+0.8
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