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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15653 and 15654 are separated by 298 nucleotides
15654 and 15655 are separated by 328 nucleotides
15655 and 15656 are separated by 461 nucleotides
15656 and 15657 are separated by 464 nucleotides
mRNA_7285: 15653 - HMMPfam-GPR1/FUN34/yaaH family-PF01184,ProSitePatterns-GPR1/FUN34/yaaH family signature.-PS01114, at 1,296,567 to 1,298,156
15653
mRNA_7286: 15654 - K17508 PTC7, PPTC7 protein phosphatase PTC7, at 1,298,455 to 1,300,194
15654
mRNA_7287: 15655 - KOG1650 Predicted K+/H+-antiporter, at 1,300,523 to 1,304,371
15655
mRNA_7288: 15656 - Hypothetical Protein, at 1,304,833 to 1,305,984
15656
mRNA_7289: 15657 - K12877 MAGOH protein mago nashi, at 1,306,449 to 1,307,582
15657
Group
Condition
mRNA
_7285
mRNA
_7286
mRNA
_7287
mRNA
_7288
mRNA
_7289
15653
15654
15655
15656
15657
growth on ricinoleic acid
YNB Glucose
-0.3
-0.2
-0.5
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.4
-0.3
-0.2
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.4
-0.1
-0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
+0.5
+0.0
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.1
+0.1
-0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.5
+0.1
+0.1
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.7
+0.0
+0.2
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.3
+0.0
-0.3
N.D.
auxotrophy
YNB Glucose
-0.4
+0.1
-0.0
-0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.5
+0.1
+0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.2
-0.2
-0.1
N.D.
auxotrophy
Dropout Complete
+0.1
-0.1
+0.1
-0.2
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.1
+0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.2
-0.0
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.2
+0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.3
+0.2
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.4
+0.0
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.0
+0.0
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.3
+0.2
+0.1
N.D.
growth on ypd
YPD
+0.2
+0.3
-0.1
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.6
+0.2
+0.0
N.D.
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