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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15654 and 15655 are separated by 328 nucleotides
15655 and 15656 are separated by 461 nucleotides
15656 and 15657 are separated by 464 nucleotides
15657 and 15658 are separated by 161 nucleotides
mRNA_7286: 15654 - K17508 PTC7, PPTC7 protein phosphatase PTC7, at 1,298,455 to 1,300,194
15654
mRNA_7287: 15655 - KOG1650 Predicted K+/H+-antiporter, at 1,300,523 to 1,304,371
15655
mRNA_7288: 15656 - Hypothetical Protein, at 1,304,833 to 1,305,984
15656
mRNA_7289: 15657 - K12877 MAGOH protein mago nashi, at 1,306,449 to 1,307,582
15657
mRNA_7290: 15658 - HMMPfam-TEA/ATTS domain family-PF01285,ProSiteProfiles-TEA domain profile.-PS51088,SMART-TEA domain-SM00426, at 1,307,744 to 1,309,291
15658
Group
Condition
mRNA
_7286
mRNA
_7287
mRNA
_7288
mRNA
_7289
mRNA
_7290
15654
15655
15656
15657
15658
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.0
-0.2
N.D.
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.0
+0.2
N.D.
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.1
-0.3
N.D.
+0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.0
-0.3
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
-0.2
-0.5
+0.1
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.2
+0.1
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.2
+0.1
N.D.
-0.7
auxotrophy
Dropout Complete
-0.1
+0.1
-0.2
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.2
+0.2
N.D.
+0.3
auxotrophy
YNB Glucose
+0.1
-0.0
-0.0
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
-0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.0
+0.1
N.D.
-0.1
growth on ypd
YPD
+0.3
-0.1
+0.4
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
-0.3
N.D.
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.2
-0.1
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.2
+0.2
N.D.
-0.4
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.1
N.D.
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.1
+0.3
N.D.
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
+0.0
N.D.
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.0
+0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.2
+0.0
N.D.
+0.3
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