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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15655 and 15656 are separated by 461 nucleotides
15656 and 15657 are separated by 464 nucleotides
15657 and 15658 are separated by 161 nucleotides
15658 and 15659 are separated by 264 nucleotides
mRNA_7287: 15655 - KOG1650 Predicted K+/H+-antiporter, at 1,300,523 to 1,304,371
15655
mRNA_7288: 15656 - Hypothetical Protein, at 1,304,833 to 1,305,984
15656
mRNA_7289: 15657 - K12877 MAGOH protein mago nashi, at 1,306,449 to 1,307,582
15657
mRNA_7290: 15658 - HMMPfam-TEA/ATTS domain family-PF01285,ProSiteProfiles-TEA domain profile.-PS51088,SMART-TEA domain-SM00426, at 1,307,744 to 1,309,291
15658
mRNA_7291: 15659 - K16803 CKAP5, XMAP215 cytoskeleton-associated protein 5, at 1,309,556 to 1,318,572
15659
Group
Condition
mRNA
_7287
mRNA
_7288
mRNA
_7289
mRNA
_7290
mRNA
_7291
15655
15656
15657
15658
15659
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.2
N.D.
-0.8
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.1
N.D.
-0.4
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.1
N.D.
-0.7
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.2
N.D.
-0.5
+0.1
growth on ricinoleic acid
YNB Glucose
-0.5
+0.1
N.D.
+0.3
-0.2
growth on ypd
YPD
-0.1
+0.4
N.D.
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
N.D.
-0.1
-0.1
auxotrophy
YNB Glucose
-0.0
-0.0
N.D.
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.3
N.D.
+0.2
+0.1
auxotrophy
Dropout Complete
+0.1
-0.2
N.D.
+0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
N.D.
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.2
N.D.
-0.4
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.3
N.D.
+0.5
+0.2
growth on oleic acid
YNB Oleic Acid
-0.2
+0.2
N.D.
+0.3
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
N.D.
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.3
N.D.
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.0
N.D.
+0.3
-0.2
growth on oleic acid
YNB Glucose
+0.1
+0.1
N.D.
+0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
N.D.
+0.7
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.3
N.D.
+0.5
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.0
N.D.
+0.5
+0.1
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