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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15658 and 15659 are separated by 264 nucleotides
15659 and 15660 are separated by 348 nucleotides
15660 and 15661 are separated by 232 nucleotides
15661 and 15662 are separated by 610 nucleotides
mRNA_7290: 15658 - HMMPfam-TEA/ATTS domain family-PF01285,ProSiteProfiles-TEA domain profile.-PS51088,SMART-TEA domain-SM00426, at 1,307,744 to 1,309,291
15658
mRNA_7291: 15659 - K16803 CKAP5, XMAP215 cytoskeleton-associated protein 5, at 1,309,556 to 1,318,572
15659
mRNA_7292: 15660 - SUPERFAMILY--SSF56112, at 1,318,921 to 1,320,950
15660
mRNA_7293: 15661 - Hypothetical Protein, at 1,321,183 to 1,322,494
15661
mRNA_7294: 15662 - HMMPfam-F-box-like-PF12937, at 1,323,105 to 1,324,702
15662
Group
Condition
mRNA
_7290
mRNA
_7291
mRNA
_7292
mRNA
_7293
mRNA
_7294
15658
15659
15660
15661
15662
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-0.3
-0.2
-0.4
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.1
-0.5
-0.0
+0.2
auxotrophy
Dropout Complete
+0.1
+0.0
-0.1
-0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.3
-0.4
+0.5
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
-0.0
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.1
-0.1
-0.2
-0.2
auxotrophy
YNB Glucose
+0.0
-0.0
+0.1
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
-0.2
+0.3
-0.4
+0.4
growth on ypd
YPD
-0.4
-0.1
+0.1
+0.4
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
+0.0
+0.7
+0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
-0.0
+0.0
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.2
+0.7
+0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
-0.0
+0.0
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.2
+0.1
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
+0.5
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.2
+0.7
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.1
-0.1
+0.0
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-0.3
-0.0
+0.3
+0.4
growth on oleic acid
YNB Glucose
+0.3
-0.1
+0.4
+0.1
+0.3
growth on oleic acid
YNB Oleic Acid
+0.3
-0.0
+0.2
+0.4
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
+0.1
+0.2
-0.0
+0.7
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