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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15667 and 15668 are separated by 2742 nucleotides
15668 and 15669 are separated by 358 nucleotides
15669 and 15670 are separated by 489 nucleotides
15670 and 15671 are separated by 156 nucleotides
mRNA_7299: 15667 - KOG1721 FOG Zn-finger, at 1,332,620 to 1,333,113
15667
mRNA_7300: 15668 - SUPERFAMILY--SSF47823, at 1,335,856 to 1,345,801
15668
mRNA_7301: 15669 - Hypothetical Protein, at 1,346,160 to 1,348,267
15669
mRNA_7302: 15670 - Hypothetical Protein, at 1,348,757 to 1,350,807
15670
mRNA_7303: 15671 - KOG1269 SAM-dependent methyltransferases, at 1,350,964 to 1,351,884
15671
Group
Condition
mRNA
_7299
mRNA
_7300
mRNA
_7301
mRNA
_7302
mRNA
_7303
15667
15668
15669
15670
15671
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
-0.2
-0.6
-0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.0
-0.6
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.5
-0.0
-0.4
-0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.1
-0.4
+0.3
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.1
-0.2
-0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.1
-0.1
-0.0
+0.2
growth on ypd
YPD
-0.2
-0.0
-0.1
+0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.0
+0.0
+0.2
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.1
-0.4
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
-0.3
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.0
+0.1
+0.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.1
-0.3
+0.4
-0.0
auxotrophy
YNB Glucose
+0.0
+0.1
+0.2
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.1
-0.3
-0.1
+0.2
growth on oleic acid
YNB Glucose
+0.1
+0.1
-0.2
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
-0.0
-0.1
+0.1
auxotrophy
Dropout Complete
+0.0
+0.1
+0.1
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.1
+0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.2
+0.1
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.2
+0.1
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.2
-0.1
+0.2
+0.5
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