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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15675 and 15676 overlap by 37 nucleotides
15676 and 15677 are separated by 655 nucleotides
15677 and 15678 are separated by 1291 nucleotides
15678 and 15679 are separated by 652 nucleotides
mRNA_7307: 15675 - Hypothetical Protein, at 1,359,048 to 1,360,624
15675
mRNA_7308: 15676 - Hypothetical Protein, at 1,360,588 to 1,362,752
15676
mRNA_7309: 15677 - KOG0803 Predicted E3 ubiquitin ligase, at 1,363,408 to 1,369,017
15677
mRNA_7310: 15678 - BLAST cytochrome P450 3A4 [Neurospora crassa OR74A], at 1,370,309 to 1,371,999
15678
mRNA_7311: 15679 - K00940 ndk, NME nucleoside-diphosphate kinase, at 1,372,652 to 1,373,595
15679
Group
Condition
mRNA
_7307
mRNA
_7308
mRNA
_7309
mRNA
_7310
mRNA
_7311
15675
15676
15677
15678
15679
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.4
-0.8
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.6
+0.0
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
-0.4
-0.2
-0.1
N.D.
auxotrophy
Dropout Complete
-0.5
-0.4
-0.0
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.3
+0.0
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.6
-0.2
+0.0
+0.0
N.D.
growth on ypd
YPD
-0.9
-0.0
+0.2
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.4
-0.0
+0.2
N.D.
auxotrophy
YNB Glucose
-0.5
-0.3
+0.1
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
-0.7
+0.0
+0.4
+0.0
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.2
-0.1
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.0
+0.3
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.4
-0.4
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.4
+0.0
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.0
+0.1
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.2
-0.2
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.3
-0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.4
-0.1
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.6
+0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+1.1
+0.7
+0.2
N.D.
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