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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15679 and 15680 are separated by 390 nucleotides
15680 and 15681 are separated by 395 nucleotides
15681 and 15682 are separated by 301 nucleotides
15682 and 15683 are separated by 373 nucleotides
mRNA_7311: 15679 - K00940 ndk, NME nucleoside-diphosphate kinase, at 1,372,652 to 1,373,595
15679
mRNA_7312: 15680 - HMMPfam-Protein of unknown function (DUF3429)-PF11911, at 1,373,986 to 1,375,689
15680
mRNA_7313: 15681 - K00417 QCR7, UQCRB ubiquinol-cytochrome c reductase subunit 7, at 1,376,085 to 1,377,067
15681
mRNA_7314: 15682 - Hypothetical Protein, at 1,377,369 to 1,379,605
15682
mRNA_7315: 15683 - K05527 bolA BolA protein, at 1,379,979 to 1,380,539
15683
Group
Condition
mRNA
_7311
mRNA
_7312
mRNA
_7313
mRNA
_7314
mRNA
_7315
15679
15680
15681
15682
15683
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
N.D.
-0.9
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
N.D.
-0.9
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
N.D.
-0.5
-0.2
growth on ypd
YPD
N.D.
+0.1
N.D.
-0.2
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
N.D.
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.3
N.D.
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
N.D.
+0.0
-0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
N.D.
-0.0
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
N.D.
-1.1
+0.6
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
N.D.
-0.0
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
N.D.
-0.2
+0.1
growth on oleic acid
YNB Glucose
N.D.
-0.1
N.D.
+0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.0
N.D.
-0.4
+0.7
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
N.D.
+0.6
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
N.D.
+0.2
+0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
N.D.
+0.2
+0.7
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
N.D.
+0.4
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
N.D.
+0.2
+0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
N.D.
-0.0
+1.2
auxotrophy
Dropout Complete
N.D.
-0.3
N.D.
+0.9
+1.2
auxotrophy
YNB Glucose
N.D.
-0.1
N.D.
+0.6
+1.5
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