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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15690 and 15691 are separated by 706 nucleotides
15691 and 15692 are separated by 250 nucleotides
15692 and 15693 are separated by 190 nucleotides
15693 and 15694 are separated by 207 nucleotides
mRNA_7322: 15690 - K14849 RRP1 ribosomal RNA-processing protein 1, at 4,422 to 5,823
15690
mRNA_7323: 15691 - K10579 UBE2M, UBC12 ubiquitin-conjugating enzyme E2 M, at 6,530 to 7,758
15691
mRNA_7324: 15692 - K20967 MOCS1 GTP 3',8-cyclase / cyclic pyranopterin monophosphate synthase, at 8,009 to 10,735
15692
mRNA_7325: 15693 - K01640 E4.1.3.4, HMGCL, hmgL hydroxymethylglutaryl-CoA lyase, at 10,926 to 12,277
15693
mRNA_7326: 15694 - K01969 E6.4.1.4B 3-methylcrotonyl-CoA carboxylase beta subunit, at 12,485 to 14,861
15694
Group
Condition
mRNA
_7322
mRNA
_7323
mRNA
_7324
mRNA
_7325
mRNA
_7326
15690
15691
15692
15693
15694
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.3
-0.1
-0.7
auxotrophy
Dropout Complete
N.D.
N.D.
-0.4
+0.3
-0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.2
-0.1
-0.4
auxotrophy
YNB Glucose
N.D.
N.D.
-0.2
+0.1
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.2
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.2
+0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.3
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.1
+0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.2
-0.2
-0.0
growth on ypd
YPD
N.D.
N.D.
-0.1
+0.4
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
-0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.3
-0.2
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
+0.4
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.2
+0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.2
+0.3
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.3
+0.2
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.2
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.3
+0.6
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.2
+0.5
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.1
+0.5
+0.5
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