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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15691 and 15692 are separated by 250 nucleotides
15692 and 15693 are separated by 190 nucleotides
15693 and 15694 are separated by 207 nucleotides
15694 and 15695 are separated by 218 nucleotides
mRNA_7323: 15691 - K10579 UBE2M, UBC12 ubiquitin-conjugating enzyme E2 M, at 6,530 to 7,758
15691
mRNA_7324: 15692 - K20967 MOCS1 GTP 3',8-cyclase / cyclic pyranopterin monophosphate synthase, at 8,009 to 10,735
15692
mRNA_7325: 15693 - K01640 E4.1.3.4, HMGCL, hmgL hydroxymethylglutaryl-CoA lyase, at 10,926 to 12,277
15693
mRNA_7326: 15694 - K01969 E6.4.1.4B 3-methylcrotonyl-CoA carboxylase beta subunit, at 12,485 to 14,861
15694
mRNA_7327: 15695 - KOG2883 NIPSNAP1 protein, at 15,080 to 16,504
15695
Group
Condition
mRNA
_7323
mRNA
_7324
mRNA
_7325
mRNA
_7326
mRNA
_7327
15691
15692
15693
15694
15695
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
-0.1
-0.7
+0.1
auxotrophy
Dropout Complete
N.D.
-0.4
+0.3
-0.6
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
+0.1
-0.5
-0.6
auxotrophy
YNB Glucose
N.D.
-0.2
+0.1
-0.5
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
-0.1
-0.4
+0.3
growth on ypd
YPD
N.D.
-0.1
+0.4
-0.2
-0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.0
-0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.3
-0.2
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.2
-0.3
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
+0.1
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
+0.4
-0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
-0.2
-0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
+0.1
-0.1
+0.4
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.1
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
+0.3
+0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
+0.3
+0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
+0.2
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
+0.6
-0.0
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.2
+0.3
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.5
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
+0.5
+0.3
+0.5
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