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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15693 and 15694 are separated by 207 nucleotides
15694 and 15695 are separated by 218 nucleotides
15695 and 15696 are separated by 297 nucleotides
15696 and 15697 are separated by 1066 nucleotides
mRNA_7325: 15693 - K01640 E4.1.3.4, HMGCL, hmgL hydroxymethylglutaryl-CoA lyase, at 10,926 to 12,277
15693
mRNA_7326: 15694 - K01969 E6.4.1.4B 3-methylcrotonyl-CoA carboxylase beta subunit, at 12,485 to 14,861
15694
mRNA_7327: 15695 - KOG2883 NIPSNAP1 protein, at 15,080 to 16,504
15695
mRNA_7328: 15696 - KOG1339 Aspartyl protease, at 16,802 to 18,584
15696
mRNA_7329: 15697 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 19,651 to 22,039
15697
Group
Condition
mRNA
_7325
mRNA
_7326
mRNA
_7327
mRNA
_7328
mRNA
_7329
15693
15694
15695
15696
15697
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.5
-0.6
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.7
+0.1
-0.1
-0.2
auxotrophy
Dropout Complete
+0.3
-0.6
-0.1
+0.0
-0.3
auxotrophy
YNB Glucose
+0.1
-0.5
+0.0
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
-0.2
+0.0
-0.2
growth on ypd
YPD
+0.4
-0.2
-0.5
+0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
-0.2
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.4
+0.3
-0.0
-0.0
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
+0.1
-0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.1
+0.0
-0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.0
+0.1
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.3
-0.0
+0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
+0.4
-0.1
-0.2
growth on ricinoleic acid
YNB Glucose
+0.1
-0.0
+0.2
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.0
-0.2
+0.1
+0.0
growth on oleic acid
YNB Glucose
+0.3
+0.1
+0.1
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
-0.0
-0.1
-0.0
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.2
+0.2
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.5
-0.1
+0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.2
+0.2
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.3
+0.5
+0.1
+0.2
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mRNA_7327
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