Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 15694 and 15695 are separated by 218 nucleotides15695 and 15696 are separated by 297 nucleotides15696 and 15697 are separated by 1066 nucleotides15697 and 15698 are separated by 516 nucleotides mRNA_7326: 15694 - K01969 E6.4.1.4B 3-methylcrotonyl-CoA carboxylase beta subunit, at 12,485 to 14,861 15694 mRNA_7327: 15695 - KOG2883 NIPSNAP1 protein, at 15,080 to 16,504 15695 mRNA_7328: 15696 - KOG1339 Aspartyl protease, at 16,802 to 18,584 15696 mRNA_7329: 15697 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 19,651 to 22,039 15697 mRNA_7330: 15698 - KOG0409 Predicted dehydrogenase, at 22,556 to 24,304 15698
Group Condition mRNA_7326 mRNA_7327 mRNA_7328 mRNA_7329 mRNA_7330
15694 15695 15696 15697 15698
ypd buoyancy 40 hrs No Buoyancy Separation -0.5 -0.6 +0.3 -0.2 -1.1
auxotrophy YNB Glucose -0.5 +0.0 -0.2 -0.1 -1.3
auxotrophy YNB Glucose 75mM Arginine -0.7 +0.1 -0.1 -0.2 -1.1
auxotrophy Dropout Complete -0.6 -0.1 +0.0 -0.3 -0.8
growth on ypd YPD -0.2 -0.5 +0.1 -0.3 -0.6
ypd buoyancy 40 hrs Low Buoyancy -0.0 -0.2 +0.0 -0.2 -1.0
growth on oleic acid YNB Oleic Acid -0.1 +0.1 -0.1 -0.3 -1.0
facs on lipid accumulation Sorted High BODIPY Gate +0.5 -0.1 +0.0 -0.1 -1.2
auxotrophy YNB Glucose 75mM Methionine -0.4 +0.3 -0.0 -0.0 -0.7
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.0 -0.2 +0.1 +0.0 -0.6
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3 -0.0 +0.2 -0.0 -0.4
ypd buoyancy 40 hrs Median Buoyancy -0.0 -0.2 -0.1 -0.1 -0.2
ypd buoyancy 40 hrs High Buoyancy -0.0 +0.1 -0.1 +0.0 -0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 -0.1 -0.0 +0.2 -0.2
growth on ricinoleic acid YNB Glucose -0.0 +0.2 +0.0 -0.0 -0.4
growth on oleic acid YNB Glucose +0.1 +0.1 -0.1 -0.0 -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 +0.4 -0.1 -0.2 +0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.1 +0.0 -0.3 -0.2 +0.6
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 +0.2 +0.2 +0.1 -0.3
facs on lipid accumulation Sorted No BODIPY Gate +0.2 +0.2 -0.1 +0.1 +0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.3 +0.5 +0.1 +0.2 -0.6
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