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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15697 and 15698 are separated by 516 nucleotides
15698 and 15699 are separated by 380 nucleotides
15699 and 15700 are separated by 698 nucleotides
15700 and 15701 are separated by 407 nucleotides
mRNA_7329: 15697 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 19,651 to 22,039
15697
mRNA_7330: 15698 - KOG0409 Predicted dehydrogenase, at 22,556 to 24,304
15698
mRNA_7331: 15699 - KOG1666 V-SNARE, at 24,685 to 25,773
15699
mRNA_7332: 15700 - K05542 DUS1 tRNA-dihydrouridine synthase 1, at 26,472 to 27,994
15700
mRNA_7333: 15701 - SUPERFAMILY--SSF52047, at 28,402 to 29,421
15701
Group
Condition
mRNA
_7329
mRNA
_7330
mRNA
_7331
mRNA
_7332
mRNA
_7333
15697
15698
15699
15700
15701
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-1.2
-3.1
-0.6
+0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-1.1
-1.5
-1.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.0
-2.7
-0.2
+0.5
growth on ypd
YPD
-0.3
-0.6
-0.7
-0.0
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.6
-2.2
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.6
-1.0
-0.5
+0.3
auxotrophy
Dropout Complete
-0.3
-0.8
-0.4
-0.4
+0.7
auxotrophy
YNB Glucose
-0.1
-1.3
-0.1
-0.4
+0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-1.1
-0.3
-0.4
+0.7
growth on oleic acid
YNB Oleic Acid
-0.3
-1.0
+0.3
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.4
+0.1
+0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.2
-0.7
+0.4
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.7
+0.5
-0.3
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.3
-0.6
+0.6
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-1.0
+0.3
+0.5
+0.3
growth on ricinoleic acid
YNB Glucose
-0.0
-0.4
+0.4
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.6
+0.2
-0.1
+0.7
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
+0.1
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.4
-0.1
-0.3
+1.1
growth on oleic acid
YNB Glucose
-0.0
-0.2
+0.6
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.2
+0.9
-0.3
+0.9
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