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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15701 and 15702 are separated by 78 nucleotides
15702 and 15703 are separated by 221 nucleotides
15703 and 15704 are separated by 4 nucleotides
15704 and 15705 are separated by 287 nucleotides
mRNA_7333: 15701 - SUPERFAMILY--SSF52047, at 28,402 to 29,421
15701
mRNA_7334: 15702 - HMMPfam-RTA1 like protein-PF04479, at 29,500 to 31,086
15702
mRNA_7335: 15703 - Hypothetical Protein, at 31,308 to 31,781
15703
mRNA_7336: 15704 - Hypothetical Protein, at 31,786 to 32,791
15704
mRNA_7337: 15705 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 33,079 to 35,089
15705
Group
Condition
mRNA
_7333
mRNA
_7334
mRNA
_7335
mRNA
_7336
mRNA
_7337
15701
15702
15703
15704
15705
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.3
+0.2
-0.1
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.4
-0.3
-0.7
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.0
+0.2
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
-0.3
-0.1
-0.6
+0.4
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
+0.0
-0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.0
+0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.2
-0.1
+0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.0
+0.3
-0.2
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.1
+0.0
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.1
-0.1
+0.0
-0.3
-0.1
growth on ypd
YPD
-0.4
+0.2
-0.2
+1.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.9
+0.1
+0.1
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.1
+0.2
-0.2
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
+0.3
+0.2
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.9
+0.2
+0.3
-0.4
+0.2
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
+0.2
+0.6
+0.2
growth on oleic acid
YNB Glucose
+0.2
+0.4
+0.2
+0.6
+0.2
auxotrophy
Dropout Complete
+0.7
-0.2
-0.1
+1.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.7
-0.1
+0.1
+1.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.2
+0.2
+1.4
+0.1
auxotrophy
YNB Glucose
+0.5
+0.2
-0.2
+1.6
+0.2
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