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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15703 and 15704 are separated by 4 nucleotides
15704 and 15705 are separated by 287 nucleotides
15705 and 15706 are separated by 439 nucleotides
15706 and 15707 are separated by 378 nucleotides
mRNA_7335: 15703 - Hypothetical Protein, at 31,308 to 31,781
15703
mRNA_7336: 15704 - Hypothetical Protein, at 31,786 to 32,791
15704
mRNA_7337: 15705 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 33,079 to 35,089
15705
mRNA_7338: 15706 - K00451 HGD, hmgA homogentisate 1,2-dioxygenase, at 35,529 to 37,856
15706
mRNA_7339: 15707 - HMMPfam-Protein of unknown function (DUF1649)-PF07855, at 38,235 to 39,594
15707
Group
Condition
mRNA
_7335
mRNA
_7336
mRNA
_7337
mRNA
_7338
mRNA
_7339
15703
15704
15705
15706
15707
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.1
-0.4
-0.5
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.7
+0.1
-0.6
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.2
-0.1
+0.3
-0.6
growth on ricinoleic acid
YNB Glucose
+0.0
-0.2
-0.0
-0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
+0.0
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.3
-0.1
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.6
+0.4
-0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
+0.1
+0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
-0.2
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
+0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.4
+0.2
-0.1
+0.5
growth on ypd
YPD
-0.2
+1.3
-0.2
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.2
+0.6
-0.3
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.0
+0.1
-0.0
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.2
+0.5
-0.0
+0.5
growth on oleic acid
YNB Oleic Acid
+0.2
+0.6
+0.2
+0.1
+0.2
growth on oleic acid
YNB Glucose
+0.2
+0.6
+0.2
+0.3
+0.0
auxotrophy
Dropout Complete
-0.1
+1.0
+0.2
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+1.1
+0.3
-0.0
+0.4
auxotrophy
YNB Glucose
-0.2
+1.6
+0.2
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+1.4
+0.1
+0.1
+0.3
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