Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 15705 and 15706 are separated by 439 nucleotides15706 and 15707 are separated by 378 nucleotides15707 and 15708 are separated by 184 nucleotides15708 and 15709 are separated by 93 nucleotides mRNA_7337: 15705 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 33,079 to 35,089 15705 mRNA_7338: 15706 - K00451 HGD, hmgA homogentisate 1,2-dioxygenase, at 35,529 to 37,856 15706 mRNA_7339: 15707 - HMMPfam-Protein of unknown function (DUF1649)-PF07855, at 38,235 to 39,594 15707 mRNA_7340: 15708 - K08073 PNKP bifunctional polynucleotide phosphatase/kinase, at 39,779 to 41,768 15708 mRNA_7341: 15709 - KOG4062 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair, at 41,862 to 42,699 15709
Group Condition mRNA_7337 mRNA_7338 mRNA_7339 mRNA_7340 mRNA_7341
15705 15706 15707 15708 15709
ypd buoyancy 40 hrs No Buoyancy Separation -0.4 -0.5 -0.6 -0.4 -0.1
growth on ypd YPD -0.2 -0.1 -0.3 -0.0 -0.4
ypd buoyancy 40 hrs Median Buoyancy +0.0 -0.1 -0.2 +0.1 -0.3
ypd buoyancy 40 hrs High Buoyancy -0.2 +0.2 -0.2 +0.1 -0.2
facs on lipid accumulation Sorted High BODIPY Gate -0.1 +0.3 -0.6 +0.1 +0.2
ypd buoyancy 40 hrs Low Buoyancy +0.1 +0.1 +0.1 -0.0 -0.1
auxotrophy YNB Glucose 75mM Arginine +0.3 -0.0 +0.4 -0.0 -0.5
auxotrophy YNB Glucose +0.2 +0.1 +0.1 +0.2 -0.5
auxotrophy YNB Glucose 75mM Methionine +0.1 +0.1 +0.3 -0.1 -0.2
auxotrophy Dropout Complete +0.2 -0.1 +0.3 +0.2 -0.3
facs on lipid accumulation Sorted No BODIPY Gate +0.1 +0.0 -0.1 +0.1 +0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.2 -0.1 +0.5 -0.1 -0.1
growth on ricinoleic acid YNB Glucose -0.0 -0.3 +0.2 -0.0 +0.6
growth on oleic acid YNB Glucose +0.2 +0.3 +0.0 +0.1 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 -0.1 +0.4 +0.1 +0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.1 -0.6 +0.6 +0.5 -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.4 -0.1 +0.4 +0.3 -0.2
growth on oleic acid YNB Oleic Acid +0.2 +0.1 +0.2 +0.2 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.6 -0.3 +0.5 +0.1 +0.5
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 -0.0 +0.6 +0.1 +0.6
growth on ricinoleic acid YNB Methylricinoleic Acid +0.5 -0.0 +0.5 +0.1 +0.5
remove
mRNA_7337
plot
remove
mRNA_7338
plot
remove
mRNA_7339
remove
mRNA_7340
plot
remove
mRNA_7341
plot