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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15706 and 15707 are separated by 378 nucleotides
15707 and 15708 are separated by 184 nucleotides
15708 and 15709 are separated by 93 nucleotides
15709 and 15710 are separated by 463 nucleotides
mRNA_7338: 15706 - K00451 HGD, hmgA homogentisate 1,2-dioxygenase, at 35,529 to 37,856
15706
mRNA_7339: 15707 - HMMPfam-Protein of unknown function (DUF1649)-PF07855, at 38,235 to 39,594
15707
mRNA_7340: 15708 - K08073 PNKP bifunctional polynucleotide phosphatase/kinase, at 39,779 to 41,768
15708
mRNA_7341: 15709 - KOG4062 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair, at 41,862 to 42,699
15709
mRNA_7342: 15710 - Hypothetical Protein, at 43,163 to 45,525
15710
Group
Condition
mRNA
_7338
mRNA
_7339
mRNA
_7340
mRNA
_7341
mRNA
_7342
15706
15707
15708
15709
15710
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.6
-0.4
-0.1
+0.5
growth on ypd
YPD
-0.1
-0.3
-0.0
-0.4
+0.2
growth on ricinoleic acid
YNB Glucose
-0.3
+0.2
-0.0
+0.6
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.6
+0.1
+0.2
+0.0
auxotrophy
YNB Glucose
+0.1
+0.1
+0.2
-0.5
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
+0.1
-0.3
+0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.4
-0.0
-0.5
+0.2
auxotrophy
Dropout Complete
-0.1
+0.3
+0.2
-0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
+0.1
-0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.6
+0.5
-0.0
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
-0.0
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.1
+0.1
+0.2
+0.1
growth on oleic acid
YNB Glucose
+0.3
+0.0
+0.1
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.3
-0.1
-0.2
+0.5
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
+0.2
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.4
+0.3
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.5
-0.1
-0.1
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.5
+0.1
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.5
+0.1
+0.5
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.4
+0.1
+0.2
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.6
+0.1
+0.6
+0.0
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