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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15707 and 15708 are separated by 184 nucleotides
15708 and 15709 are separated by 93 nucleotides
15709 and 15710 are separated by 463 nucleotides
15710 and 15711 are separated by 209 nucleotides
mRNA_7339: 15707 - HMMPfam-Protein of unknown function (DUF1649)-PF07855, at 38,235 to 39,594
15707
mRNA_7340: 15708 - K08073 PNKP bifunctional polynucleotide phosphatase/kinase, at 39,779 to 41,768
15708
mRNA_7341: 15709 - KOG4062 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair, at 41,862 to 42,699
15709
mRNA_7342: 15710 - Hypothetical Protein, at 43,163 to 45,525
15710
mRNA_7343: 15711 - K04798 pfdB, PFDN6 prefoldin beta subunit, at 45,735 to 46,573
15711
Group
Condition
mRNA
_7339
mRNA
_7340
mRNA
_7341
mRNA
_7342
mRNA
_7343
15707
15708
15709
15710
15711
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.4
-0.1
+0.5
-2.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
-0.2
+0.2
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
+0.1
+0.2
+0.0
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.0
-0.1
+0.2
-0.3
growth on ypd
YPD
-0.3
-0.0
-0.4
+0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
-0.3
+0.5
-0.3
growth on ricinoleic acid
YNB Glucose
+0.2
-0.0
+0.6
-0.5
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
+0.2
+0.1
-0.1
auxotrophy
YNB Glucose
+0.1
+0.2
-0.5
+0.0
+0.5
growth on oleic acid
YNB Oleic Acid
+0.2
+0.2
+0.1
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.0
-0.5
+0.2
+0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
+0.5
-0.0
-0.3
-0.1
growth on oleic acid
YNB Glucose
+0.0
+0.1
-0.1
+0.1
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.1
+0.6
+0.0
-0.7
auxotrophy
Dropout Complete
+0.3
+0.2
-0.3
-0.0
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.1
-0.1
+0.7
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.1
+0.5
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.1
-0.2
+0.5
+0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.1
+0.2
+0.6
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.3
-0.2
+0.4
+0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.1
+0.5
+0.4
+1.0
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