Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 15707 and 15708 are separated by 184 nucleotides15708 and 15709 are separated by 93 nucleotides15709 and 15710 are separated by 463 nucleotides15710 and 15711 are separated by 209 nucleotides mRNA_7339: 15707 - HMMPfam-Protein of unknown function (DUF1649)-PF07855, at 38,235 to 39,594 15707 mRNA_7340: 15708 - K08073 PNKP bifunctional polynucleotide phosphatase/kinase, at 39,779 to 41,768 15708 mRNA_7341: 15709 - KOG4062 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair, at 41,862 to 42,699 15709 mRNA_7342: 15710 - Hypothetical Protein, at 43,163 to 45,525 15710 mRNA_7343: 15711 - K04798 pfdB, PFDN6 prefoldin beta subunit, at 45,735 to 46,573 15711
Group Condition mRNA_7339 mRNA_7340 mRNA_7341 mRNA_7342 mRNA_7343
15707 15708 15709 15710 15711
ypd buoyancy 40 hrs No Buoyancy Separation -0.6 -0.4 -0.1 +0.5 -2.2
ypd buoyancy 40 hrs High Buoyancy -0.2 +0.1 -0.2 +0.2 -0.8
facs on lipid accumulation Sorted High BODIPY Gate -0.6 +0.1 +0.2 +0.0 -0.4
ypd buoyancy 40 hrs Low Buoyancy +0.1 -0.0 -0.1 +0.2 -0.3
growth on ypd YPD -0.3 -0.0 -0.4 +0.2 +0.3
ypd buoyancy 40 hrs Median Buoyancy -0.2 +0.1 -0.3 +0.5 -0.3
growth on ricinoleic acid YNB Glucose +0.2 -0.0 +0.6 -0.5 -0.2
facs on lipid accumulation Sorted No BODIPY Gate -0.1 +0.1 +0.2 +0.1 -0.1
auxotrophy YNB Glucose +0.1 +0.2 -0.5 +0.0 +0.5
growth on oleic acid YNB Oleic Acid +0.2 +0.2 +0.1 +0.2 -0.1
auxotrophy YNB Glucose 75mM Arginine +0.4 -0.0 -0.5 +0.2 +0.6
facs on lipid accumulation Sorted Low BODIPY Gate +0.6 +0.5 -0.0 -0.3 -0.1
growth on oleic acid YNB Glucose +0.0 +0.1 -0.1 +0.1 +0.5
growth on ricinoleic acid YNB Ricinoleic Acid +0.6 +0.1 +0.6 +0.0 -0.7
auxotrophy Dropout Complete +0.3 +0.2 -0.3 -0.0 +0.7
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.5 -0.1 -0.1 +0.7 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.5 +0.1 +0.5 -0.1 +0.1
auxotrophy YNB Glucose 75mM Methionine +0.3 -0.1 -0.2 +0.5 +0.8
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.4 +0.1 +0.2 +0.6 +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.4 +0.3 -0.2 +0.4 +0.8
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.5 +0.1 +0.5 +0.4 +1.0
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