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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15709 and 15710 are separated by 463 nucleotides
15710 and 15711 are separated by 209 nucleotides
15711 and 15712 are separated by 227 nucleotides
15712 and 15713 are separated by 516 nucleotides
mRNA_7341: 15709 - KOG4062 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair, at 41,862 to 42,699
15709
mRNA_7342: 15710 - Hypothetical Protein, at 43,163 to 45,525
15710
mRNA_7343: 15711 - K04798 pfdB, PFDN6 prefoldin beta subunit, at 45,735 to 46,573
15711
mRNA_7344: 15712 - K01697 E4.2.1.22, CBS cystathionine beta-synthase, at 46,801 to 48,602
15712
mRNA_7345: 15713 - K00264 GLT1 glutamate synthase (NADPH/NADH), at 49,119 to 56,418
15713
Group
Condition
mRNA
_7341
mRNA
_7342
mRNA
_7343
mRNA
_7344
mRNA
_7345
15709
15710
15711
15712
15713
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.5
-2.2
-0.6
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.3
-0.1
-1.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.2
-0.8
-0.6
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
-0.1
-1.4
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
-0.3
-0.4
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.5
-0.3
-0.4
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.0
-0.7
-0.7
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.0
-0.4
+0.5
-0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.2
+0.6
-0.5
-0.1
auxotrophy
YNB Glucose
-0.5
+0.0
+0.5
-0.3
-0.0
growth on ricinoleic acid
YNB Glucose
+0.6
-0.5
-0.2
-0.2
+0.0
auxotrophy
Dropout Complete
-0.3
-0.0
+0.7
-0.5
+0.1
growth on ypd
YPD
-0.4
+0.2
+0.3
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.4
+0.8
-0.6
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.7
+0.1
-0.3
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.1
+0.1
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.5
+0.8
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.6
+0.2
-0.3
+0.0
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.5
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
-0.1
+0.6
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.4
+1.0
-0.7
-0.1
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