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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15711 and 15712 are separated by 227 nucleotides
15712 and 15713 are separated by 516 nucleotides
15713 and 15714 are separated by 1797 nucleotides
15714 and 15715 are separated by 282 nucleotides
mRNA_7343: 15711 - K04798 pfdB, PFDN6 prefoldin beta subunit, at 45,735 to 46,573
15711
mRNA_7344: 15712 - K01697 E4.2.1.22, CBS cystathionine beta-synthase, at 46,801 to 48,602
15712
mRNA_7345: 15713 - K00264 GLT1 glutamate synthase (NADPH/NADH), at 49,119 to 56,418
15713
mRNA_7346: 15714 - Hypothetical Protein, at 58,216 to 59,419
15714
mRNA_7347: 15715 - K09495 CCT3, TRIC5 T-complex protein 1 subunit gamma, at 59,702 to 62,348
15715
Group
Condition
mRNA
_7343
mRNA
_7344
mRNA
_7345
mRNA
_7346
mRNA
_7347
15711
15712
15713
15714
15715
ypd buoyancy
40 hrs No Buoyancy Separation
-2.2
-0.6
+0.1
+0.7
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.8
-0.6
-0.0
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-1.4
-0.0
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.4
-0.1
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.5
-0.6
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-1.2
+0.1
+0.5
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.4
-0.0
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.3
+0.1
-0.3
N.D.
auxotrophy
Dropout Complete
+0.7
-0.5
+0.1
-0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-0.7
+0.1
+1.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.3
+0.0
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-0.5
-0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
-0.6
+0.1
-0.2
N.D.
auxotrophy
YNB Glucose
+0.5
-0.3
-0.0
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.0
-0.7
-0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
-0.2
+0.0
+0.8
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
+0.2
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.8
-0.5
+0.0
+0.2
N.D.
growth on ypd
YPD
+0.3
-0.1
+0.1
+0.4
N.D.
growth on oleic acid
YNB Glucose
+0.5
+0.1
+0.2
+0.4
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+0.6
+0.2
+0.7
N.D.
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