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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15716 and 15717 are separated by 143 nucleotides
15717 and 15718 are separated by 504 nucleotides
15718 and 15719 are separated by 1142 nucleotides
15719 and 15720 are separated by 1008 nucleotides
mRNA_7348: 15716 - KOG0364 Chaperonin complex component, TCP-1 gamma subunit (CCT3), at 62,723 to 63,875
15716
mRNA_7349: 15717 - K07207 TSC2 tuberous sclerosis 2, at 64,019 to 67,525
15717
mRNA_7350: 15718 - Hypothetical Protein, at 68,030 to 70,360
15718
mRNA_7351: 15719 - BLAST unknown [Tremella fuciformis], at 71,503 to 72,321
15719
mRNA_7352: 15720 - Hypothetical Protein, at 73,330 to 74,723
15720
Group
Condition
mRNA
_7348
mRNA
_7349
mRNA
_7350
mRNA
_7351
mRNA
_7352
15716
15717
15718
15719
15720
auxotrophy
YNB Glucose 75mM Methionine
-1.3
N.D.
N.D.
-0.0
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
N.D.
-0.3
-1.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.1
N.D.
N.D.
+0.2
-0.7
auxotrophy
YNB Glucose
-1.0
N.D.
N.D.
-0.1
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
N.D.
N.D.
+0.5
-1.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.8
N.D.
N.D.
+0.3
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
N.D.
N.D.
+0.1
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.9
N.D.
N.D.
+0.2
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
N.D.
N.D.
+0.2
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
N.D.
N.D.
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
N.D.
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
N.D.
N.D.
+0.2
-0.2
growth on ricinoleic acid
YNB Glucose
-0.3
N.D.
N.D.
+0.0
+0.1
auxotrophy
Dropout Complete
-0.3
N.D.
N.D.
-0.0
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
N.D.
N.D.
-0.2
-0.0
growth on oleic acid
YNB Glucose
-0.1
N.D.
N.D.
-0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
N.D.
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
N.D.
N.D.
+0.5
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
N.D.
+0.2
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
N.D.
+0.2
+0.4
growth on ypd
YPD
+0.4
N.D.
N.D.
-0.1
+0.7
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