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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15720 and 15721 are separated by 373 nucleotides
15721 and 15722 are separated by 234 nucleotides
15722 and 15723 are separated by 305 nucleotides
15723 and 15724 are separated by 551 nucleotides
mRNA_7352: 15720 - Hypothetical Protein, at 73,330 to 74,723
15720
mRNA_7353: 15721 - K00927 PGK, pgk phosphoglycerate kinase, at 75,097 to 76,913
15721
mRNA_7354: 15722 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 77,148 to 79,118
15722
mRNA_7355: 15723 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 79,424 to 80,346
15723
mRNA_7356: 15724 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 80,898 to 81,821
15724
Group
Condition
mRNA
_7352
mRNA
_7353
mRNA
_7354
mRNA
_7355
mRNA
_7356
15720
15721
15722
15723
15724
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
N.D.
-0.1
-0.5
-1.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
N.D.
-0.2
-0.4
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
N.D.
-0.1
+0.2
-0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.0
N.D.
-0.1
-0.0
-1.0
auxotrophy
YNB Glucose
-0.4
N.D.
-0.2
+0.5
-1.1
growth on oleic acid
YNB Glucose
-0.0
N.D.
-0.2
-0.2
-0.5
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
-0.3
-0.1
-0.3
auxotrophy
Dropout Complete
+0.2
N.D.
-0.0
+0.1
-1.1
auxotrophy
YNB Glucose 75mM Methionine
-0.6
N.D.
-0.1
+0.3
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
N.D.
+0.1
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-1.3
N.D.
-0.2
+0.5
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
N.D.
-0.2
-0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
-0.3
+0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
N.D.
-0.0
+0.4
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
+0.1
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
N.D.
-0.2
+0.4
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
-0.1
-0.3
+0.6
ypd buoyancy
40 hrs High Buoyancy
+0.4
N.D.
-0.2
+0.7
-0.4
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.0
+0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
-0.0
+0.6
+0.0
growth on ypd
YPD
+0.7
N.D.
-0.2
+0.0
+0.7
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