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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15724 and 15725 are separated by 412 nucleotides
15725 and 15726 are separated by 452 nucleotides
15726 and 15727 are separated by 170 nucleotides
15727 and 15728 are separated by 1512 nucleotides
mRNA_7356: 15724 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 80,898 to 81,821
15724
mRNA_7357: 15725 - Hypothetical Protein, at 82,234 to 84,306
15725
mRNA_7358: 15726 - Hypothetical Protein, at 84,759 to 87,914
15726
mRNA_7359: 15727 - KOG3130 Uncharacterized conserved protein, at 88,085 to 88,999
15727
mRNA_7360: 15728 - Hypothetical Protein, at 90,512 to 91,159
15728
Group
Condition
mRNA
_7356
mRNA
_7357
mRNA
_7358
mRNA
_7359
mRNA
_7360
15724
15725
15726
15727
15728
ypd buoyancy
40 hrs No Buoyancy Separation
-1.7
-0.2
N.D.
-0.1
N.D.
auxotrophy
Dropout Complete
-1.1
-0.2
N.D.
+0.2
N.D.
auxotrophy
YNB Glucose
-1.1
-0.2
N.D.
+0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.0
N.D.
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-1.0
-0.3
N.D.
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-0.3
N.D.
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.2
N.D.
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.3
N.D.
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.1
N.D.
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
N.D.
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.0
N.D.
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
-0.5
N.D.
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.4
N.D.
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.3
+0.3
N.D.
+0.2
N.D.
growth on ypd
YPD
+0.7
-0.1
N.D.
-0.4
N.D.
growth on oleic acid
YNB Glucose
-0.5
+0.2
N.D.
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
N.D.
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
N.D.
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.2
N.D.
+0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.5
N.D.
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.5
N.D.
-0.2
N.D.
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