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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15731 and 15732 are separated by 397 nucleotides
15732 and 15733 are separated by 95 nucleotides
15733 and 15734 are separated by 251 nucleotides
15734 and 15735 are separated by 811 nucleotides
mRNA_7363: 15731 - SUPERFAMILY--SSF48371, at 95,287 to 98,403
15731
mRNA_7364: 15732 - KOG1337 N-methyltransferase, at 98,801 to 102,847
15732
mRNA_7365: 15733 - Hypothetical Protein, at 102,943 to 104,194
15733
mRNA_7366: 15734 - SUPERFAMILY--SSF57701, at 104,446 to 105,512
15734
mRNA_7367: 15735 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 106,324 to 107,108
15735
Group
Condition
mRNA
_7363
mRNA
_7364
mRNA
_7365
mRNA
_7366
mRNA
_7367
15731
15732
15733
15734
15735
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
-0.5
-0.4
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.2
-0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
-0.1
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
+0.1
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
-0.3
+0.1
-0.2
growth on ypd
YPD
N.D.
+0.1
+0.3
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
-0.2
-0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.1
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.0
-0.0
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.2
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.0
+0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.0
-0.0
+0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.5
-0.0
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.5
-0.3
+0.2
-0.0
auxotrophy
Dropout Complete
N.D.
+0.3
-0.0
+0.4
-0.2
auxotrophy
YNB Glucose
N.D.
+0.1
-0.3
+0.5
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.4
+0.1
+0.3
-0.2
growth on oleic acid
YNB Glucose
N.D.
+0.3
+0.2
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
-0.2
-0.0
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.4
+0.4
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
+0.0
+0.4
+0.2
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