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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15733 and 15734 are separated by 251 nucleotides
15734 and 15735 are separated by 811 nucleotides
15735 and 15736 are separated by 339 nucleotides
15736 and 15737 are separated by 538 nucleotides
mRNA_7365: 15733 - Hypothetical Protein, at 102,943 to 104,194
15733
mRNA_7366: 15734 - SUPERFAMILY--SSF57701, at 104,446 to 105,512
15734
mRNA_7367: 15735 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 106,324 to 107,108
15735
mRNA_7368: 15736 - K14708 SLC26A11 solute carrier family 26 (sodium-independent sulfate anion transporter), member 11, at 107,448 to 110,616
15736
mRNA_7369: 15737 - KOG1203 Predicted dehydrogenase, at 111,155 to 112,314
15737
Group
Condition
mRNA
_7365
mRNA
_7366
mRNA
_7367
mRNA
_7368
mRNA
_7369
15733
15734
15735
15736
15737
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.4
+0.3
+0.3
-1.0
growth on ypd
YPD
+0.3
-0.4
-0.1
-0.3
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.3
+0.1
-0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.1
-0.1
+0.0
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.4
+0.0
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.2
+0.1
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.1
-0.2
-0.5
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.3
-0.2
-0.3
+0.1
growth on ricinoleic acid
YNB Glucose
-0.3
+0.2
-0.0
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.0
+0.1
-0.5
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.3
-0.1
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.4
-0.1
-0.2
+0.5
auxotrophy
Dropout Complete
-0.0
+0.4
-0.2
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
-0.0
-0.3
+1.2
growth on oleic acid
YNB Oleic Acid
-0.0
-0.0
+0.0
+0.1
+0.5
growth on oleic acid
YNB Glucose
+0.2
+0.2
+0.1
+0.0
+0.2
auxotrophy
YNB Glucose
-0.3
+0.5
+0.2
-0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
-0.2
+0.7
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.2
+0.2
-0.1
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.0
+0.7
+0.2
+0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.4
+0.2
+0.0
+1.7
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