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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15735 and 15736 are separated by 339 nucleotides
15736 and 15737 are separated by 538 nucleotides
15737 and 15738 are separated by 546 nucleotides
15738 and 15739 are separated by 260 nucleotides
mRNA_7367: 15735 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 106,324 to 107,108
15735
mRNA_7368: 15736 - K14708 SLC26A11 solute carrier family 26 (sodium-independent sulfate anion transporter), member 11, at 107,448 to 110,616
15736
mRNA_7369: 15737 - KOG1203 Predicted dehydrogenase, at 111,155 to 112,314
15737
mRNA_7370: 15738 - HMMPfam-Oligomerisation domain-PF02410, at 112,861 to 113,422
15738
mRNA_7371: 15739 - Hypothetical Protein, at 113,683 to 115,680
15739
Group
Condition
mRNA
_7367
mRNA
_7368
mRNA
_7369
mRNA
_7370
mRNA
_7371
15735
15736
15737
15738
15739
growth on ypd
YPD
-0.1
-0.3
-0.6
-0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.3
-1.0
-0.4
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.3
+0.1
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.5
+0.5
-0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.0
-0.4
+0.2
+0.1
auxotrophy
Dropout Complete
-0.2
+0.1
+0.3
+0.0
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
+0.2
+0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
-0.2
+0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
-0.1
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
+0.5
+0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
-0.2
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.5
+0.3
+0.1
+0.3
growth on ricinoleic acid
YNB Glucose
-0.0
-0.0
+0.2
-0.0
+0.2
auxotrophy
YNB Glucose
+0.2
-0.1
+0.3
+0.1
+0.0
growth on oleic acid
YNB Glucose
+0.1
+0.0
+0.2
+0.3
-0.0
growth on oleic acid
YNB Oleic Acid
+0.0
+0.1
+0.5
+0.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.7
+0.4
+0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
+0.7
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.3
+1.2
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.0
+1.7
-0.1
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
+0.2
+0.9
+0.3
+0.1
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