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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15737 and 15738 are separated by 546 nucleotides
15738 and 15739 are separated by 260 nucleotides
15739 and 15740 are separated by 533 nucleotides
15740 and 15741 are separated by 532 nucleotides
mRNA_7369: 15737 - KOG1203 Predicted dehydrogenase, at 111,155 to 112,314
15737
mRNA_7370: 15738 - HMMPfam-Oligomerisation domain-PF02410, at 112,861 to 113,422
15738
mRNA_7371: 15739 - Hypothetical Protein, at 113,683 to 115,680
15739
mRNA_7372: 15740 - K03869 CUL3 cullin 3, at 116,214 to 119,420
15740
mRNA_7373: 15741 - HMMPfam-FAD binding domain-PF01494,PRINTS-Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature-PR00420,SUPERFAMILY--SSF51905, at 119,953 to 122,182
15741
Group
Condition
mRNA
_7369
mRNA
_7370
mRNA
_7371
mRNA
_7372
mRNA
_7373
15737
15738
15739
15740
15741
growth on ypd
YPD
-0.6
-0.0
+0.1
-0.3
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.2
+0.1
-0.4
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.1
-0.0
-0.5
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-0.4
+0.1
+0.4
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
+0.0
-0.4
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.1
-0.1
-0.3
+0.3
auxotrophy
Dropout Complete
+0.3
+0.0
-0.4
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.0
+0.0
+0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.3
+0.1
+0.1
+0.3
auxotrophy
YNB Glucose
+0.3
+0.1
+0.0
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+0.2
-0.0
+0.2
-0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
+0.1
+0.1
+0.5
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
+0.1
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.0
-0.0
+0.2
+0.4
growth on oleic acid
YNB Glucose
+0.2
+0.3
-0.0
+0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
+0.3
+0.1
-0.6
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.9
+0.3
+0.1
-0.3
+0.1
growth on oleic acid
YNB Oleic Acid
+0.5
+0.3
-0.2
-0.1
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.1
+0.3
-0.2
+1.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.7
-0.1
+0.4
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.2
+0.1
+0.4
+0.1
+0.7
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