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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15741 and 15742 are separated by 926 nucleotides
15742 and 15743 are separated by 2421 nucleotides
15743 and 15744 are separated by 295 nucleotides
15744 and 15745 are separated by 216 nucleotides
mRNA_7373: 15741 - HMMPfam-FAD binding domain-PF01494,PRINTS-Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature-PR00420,SUPERFAMILY--SSF51905, at 119,953 to 122,182
15741
mRNA_7374: 15742 - Hypothetical Protein, at 123,109 to 123,612
15742
mRNA_7375: 15743 - HMMPfam-Chromosome segregation protein Csm1/Pcs1-PF12539, at 126,034 to 127,845
15743
mRNA_7376: 15744 - K19030 PFKFB4 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 4, at 128,141 to 130,355
15744
mRNA_7377: 15745 - KOG1256 Long-chain acyl-CoA synthetases (AMP-forming), at 130,572 to 131,007
15745
Group
Condition
mRNA
_7373
mRNA
_7374
mRNA
_7375
mRNA
_7376
mRNA
_7377
15741
15742
15743
15744
15745
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-4.1
-0.1
-0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.4
-1.8
-1.0
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.6
-1.1
-1.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-1.5
+0.1
-0.7
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.6
-0.2
-1.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
-0.7
+0.1
-0.2
-0.1
growth on ypd
YPD
-0.4
+0.0
-0.3
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.3
-0.3
+0.5
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
-1.0
+0.6
-0.5
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.5
-0.5
+0.1
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.0
-0.1
-0.3
-0.1
growth on oleic acid
YNB Glucose
+0.4
+0.3
-0.5
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.2
-0.2
+0.1
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.2
+0.6
+0.3
-0.1
auxotrophy
YNB Glucose
+0.2
+1.1
-0.2
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
-0.3
+0.5
+0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.6
+0.4
+0.1
-0.3
auxotrophy
Dropout Complete
+0.2
+1.1
-0.2
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+1.0
-0.2
+0.0
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+1.6
-0.2
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+0.7
+0.8
-0.6
+0.5
-0.1
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