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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15744 and 15745 are separated by 216 nucleotides
15745 and 15746 are separated by 1141 nucleotides
15746 and 15747 are separated by 1051 nucleotides
15747 and 15748 are separated by 228 nucleotides
mRNA_7376: 15744 - K19030 PFKFB4 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 4, at 128,141 to 130,355
15744
mRNA_7377: 15745 - KOG1256 Long-chain acyl-CoA synthetases (AMP-forming), at 130,572 to 131,007
15745
mRNA_7378: 15746 - KOG1180 Acyl-CoA synthetase, at 132,149 to 133,750
15746
mRNA_7379: 15747 - SUPERFAMILY--SSF49344, at 134,802 to 136,760
15747
mRNA_7380: 15748 - K01897 ACSL, fadD long-chain acyl-CoA synthetase, at 136,989 to 140,179
15748
Group
Condition
mRNA
_7376
mRNA
_7377
mRNA
_7378
mRNA
_7379
mRNA
_7380
15744
15745
15746
15747
15748
growth on oleic acid
YNB Glucose
+0.1
-0.1
-0.5
-0.0
-1.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
+0.1
+0.4
+0.1
-1.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.1
-0.1
-0.3
-1.2
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
-0.3
-0.1
-1.2
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
-0.2
+0.1
+0.2
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.1
-0.5
+0.2
-1.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
-0.2
-0.2
-0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.1
-1.1
-0.3
-0.1
auxotrophy
YNB Glucose
-0.0
-0.3
+0.2
-0.0
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
-0.2
+0.8
+0.4
-1.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
-0.5
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
-0.8
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.4
-0.2
-0.0
+0.0
auxotrophy
Dropout Complete
+0.1
-0.1
+0.5
-0.3
-0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
+1.0
-0.0
-1.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.8
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.0
+0.9
+0.0
-1.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.2
-0.6
-0.1
+1.0
growth on oleic acid
YNB Oleic Acid
+0.5
-0.1
+0.2
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.2
+0.3
+0.0
+0.1
growth on ypd
YPD
+0.1
+0.1
+1.1
+0.1
+0.0
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