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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15747 and 15748 are separated by 228 nucleotides
15748 and 15749 are separated by 1050 nucleotides
15749 and 15750 are separated by 47 nucleotides
15750 and 15751 are separated by 694 nucleotides
mRNA_7379: 15747 - SUPERFAMILY--SSF49344, at 134,802 to 136,760
15747
mRNA_7380: 15748 - K01897 ACSL, fadD long-chain acyl-CoA synthetase, at 136,989 to 140,179
15748
mRNA_7381: 15749 - K03128 TAF2 transcription initiation factor TFIID subunit 2, at 141,230 to 147,514
15749
mRNA_7382: 15750 - Hypothetical Protein, at 147,562 to 148,955
15750
mRNA_7383: 15751 - K19355 MAN mannan endo-1,4-beta-mannosidase, at 149,650 to 152,306
15751
Group
Condition
mRNA
_7379
mRNA
_7380
mRNA
_7381
mRNA
_7382
mRNA
_7383
15747
15748
15749
15750
15751
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-1.5
N.D.
+0.2
-2.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.8
N.D.
-0.3
-1.1
growth on oleic acid
YNB Glucose
-0.0
-1.6
N.D.
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-1.2
N.D.
+0.4
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-1.1
N.D.
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-1.2
N.D.
+0.3
+0.0
auxotrophy
YNB Glucose
-0.0
-1.0
N.D.
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-1.3
N.D.
+0.3
+0.2
growth on ricinoleic acid
YNB Glucose
-0.1
-1.2
N.D.
+0.1
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.4
N.D.
-0.3
-0.6
auxotrophy
Dropout Complete
-0.3
-0.8
N.D.
+0.1
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-1.2
N.D.
+0.1
+1.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.1
N.D.
+0.0
+0.0
growth on oleic acid
YNB Oleic Acid
-0.0
-0.3
N.D.
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.0
N.D.
+0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.2
N.D.
-0.3
+0.6
growth on ypd
YPD
+0.1
+0.0
N.D.
+0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.3
N.D.
-0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.1
N.D.
+0.1
+1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.1
N.D.
+0.2
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+1.0
N.D.
+0.2
-0.1
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