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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15750 and 15751 are separated by 694 nucleotides
15751 and 15752 are separated by 606 nucleotides
15752 and 15753 are separated by 289 nucleotides
15753 and 15754 are separated by 159 nucleotides
mRNA_7382: 15750 - Hypothetical Protein, at 147,562 to 148,955
15750
mRNA_7383: 15751 - K19355 MAN mannan endo-1,4-beta-mannosidase, at 149,650 to 152,306
15751
mRNA_7384: 15752 - K11128 GAR1, NOLA1 H/ACA ribonucleoprotein complex subunit 1, at 152,913 to 154,132
15752
mRNA_7385: 15753 - ProSiteProfiles-Ubiquitin-interacting motif (UIM) repeat profile.-PS50330, at 154,422 to 157,963
15753
mRNA_7386: 15754 - HMMPfam-F-box-like-PF12937, at 158,123 to 159,294
15754
Group
Condition
mRNA
_7382
mRNA
_7383
mRNA
_7384
mRNA
_7385
mRNA
_7386
15750
15751
15752
15753
15754
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.6
N.D.
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.0
N.D.
-0.2
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.3
N.D.
-0.2
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-1.1
N.D.
+0.1
+0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.1
N.D.
-0.0
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
N.D.
-0.4
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-2.0
N.D.
+0.3
+1.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.5
N.D.
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.5
N.D.
-0.6
-0.3
growth on oleic acid
YNB Glucose
+0.2
+0.1
N.D.
-0.0
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
N.D.
-0.1
+0.0
growth on oleic acid
YNB Oleic Acid
+0.2
+0.3
N.D.
-0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.6
N.D.
-0.3
+0.1
auxotrophy
YNB Glucose
+0.1
+0.0
N.D.
-0.1
-0.0
growth on ricinoleic acid
YNB Glucose
+0.1
+0.4
N.D.
-0.2
-0.3
growth on ypd
YPD
+0.3
-0.1
N.D.
+0.0
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.2
N.D.
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.0
N.D.
-0.0
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+1.1
N.D.
-0.2
-0.3
auxotrophy
Dropout Complete
+0.1
+0.4
N.D.
-0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+1.0
N.D.
-0.3
+0.3
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