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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15752 and 15753 are separated by 289 nucleotides
15753 and 15754 are separated by 159 nucleotides
15754 and 15755 are separated by 293 nucleotides
15755 and 15756 are separated by 684 nucleotides
mRNA_7384: 15752 - K11128 GAR1, NOLA1 H/ACA ribonucleoprotein complex subunit 1, at 152,913 to 154,132
15752
mRNA_7385: 15753 - ProSiteProfiles-Ubiquitin-interacting motif (UIM) repeat profile.-PS50330, at 154,422 to 157,963
15753
mRNA_7386: 15754 - HMMPfam-F-box-like-PF12937, at 158,123 to 159,294
15754
mRNA_7387: 15755 - Hypothetical Protein, at 159,588 to 160,374
15755
mRNA_7388: 15756 - K01951 guaA, GMPS GMP synthase (glutamine-hydrolysing), at 161,059 to 163,298
15756
Group
Condition
mRNA
_7384
mRNA
_7385
mRNA
_7386
mRNA
_7387
mRNA
_7388
15752
15753
15754
15755
15756
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.8
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
-0.3
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
-0.7
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.0
-0.5
+0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
+0.2
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.6
-0.3
+0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
+0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
-0.3
-0.3
N.D.
auxotrophy
YNB Glucose
N.D.
-0.1
-0.0
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
-0.3
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
-0.3
+0.2
N.D.
auxotrophy
Dropout Complete
N.D.
-0.1
+0.4
-0.6
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.2
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
+0.3
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.0
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.3
+0.3
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.0
+0.5
-0.3
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.0
-0.4
+0.9
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
+0.7
+0.1
N.D.
growth on ypd
YPD
N.D.
+0.0
+0.4
+0.8
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
+1.2
+0.1
N.D.
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