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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15754 and 15755 are separated by 293 nucleotides
15755 and 15756 are separated by 684 nucleotides
15756 and 15757 are separated by 4225 nucleotides
15757 and 15758 are separated by 404 nucleotides
mRNA_7386: 15754 - HMMPfam-F-box-like-PF12937, at 158,123 to 159,294
15754
mRNA_7387: 15755 - Hypothetical Protein, at 159,588 to 160,374
15755
mRNA_7388: 15756 - K01951 guaA, GMPS GMP synthase (glutamine-hydrolysing), at 161,059 to 163,298
15756
mRNA_7389: 15757 - Hypothetical Protein, at 167,524 to 168,424
15757
mRNA_7390: 15758 - HMMPfam-Ubiquinol-cytochrome C reductase hinge protein-PF02320,SUPERFAMILY--SSF81531, at 168,829 to 169,694
15758
Group
Condition
mRNA
_7386
mRNA
_7387
mRNA
_7388
mRNA
_7389
mRNA
_7390
15754
15755
15756
15757
15758
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.0
N.D.
-1.2
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
+0.3
N.D.
-1.6
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.1
N.D.
-0.1
-1.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.3
N.D.
-0.8
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.1
N.D.
+0.4
-2.1
growth on oleic acid
YNB Oleic Acid
-0.3
+0.2
N.D.
-0.6
-0.6
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
N.D.
-0.5
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.8
+0.2
N.D.
-0.4
-0.1
auxotrophy
YNB Glucose
-0.0
-0.3
N.D.
-0.9
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.4
N.D.
-0.3
-0.3
growth on ricinoleic acid
YNB Glucose
-0.3
+0.1
N.D.
-0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
N.D.
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.4
N.D.
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.2
N.D.
-0.4
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
N.D.
-0.0
-0.1
auxotrophy
Dropout Complete
+0.4
-0.6
N.D.
-0.1
+0.7
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.3
N.D.
-0.2
+0.4
growth on oleic acid
YNB Glucose
-0.4
+0.9
N.D.
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
+0.1
N.D.
-0.5
+0.4
growth on ypd
YPD
+0.4
+0.8
N.D.
+0.0
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.2
+0.1
N.D.
+0.2
+0.4
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