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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15758 and 15759 are separated by 119 nucleotides
15759 and 15760 are separated by 374 nucleotides
15760 and 15761 are separated by 173 nucleotides
15761 and 15762 are separated by 952 nucleotides
mRNA_7390: 15758 - HMMPfam-Ubiquinol-cytochrome C reductase hinge protein-PF02320,SUPERFAMILY--SSF81531, at 168,829 to 169,694
15758
mRNA_7391: 15759 - K00547 mmuM, BHMT2 homocysteine S-methyltransferase, at 169,814 to 171,234
15759
mRNA_7392: 15760 - Hypothetical Protein, at 171,609 to 172,297
15760
mRNA_7393: 15761 - HMMPfam-Velvet factor-PF11754, at 172,471 to 174,336
15761
mRNA_7394: 15762 - KOG0569 Permease of the major facilitator superfamily, at 175,289 to 177,598
15762
Group
Condition
mRNA
_7390
mRNA
_7391
mRNA
_7392
mRNA
_7393
mRNA
_7394
15758
15759
15760
15761
15762
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.6
+1.0
-0.5
-1.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.1
+0.2
+0.6
-0.5
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.2
-0.2
+0.2
-0.2
-0.2
growth on oleic acid
YNB Oleic Acid
-0.6
-0.1
-0.6
+0.0
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-1.0
+0.1
-0.0
-0.5
growth on ypd
YPD
+0.5
-1.4
-0.1
+0.7
-0.5
growth on oleic acid
YNB Glucose
+0.1
-0.2
-0.6
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.6
-0.2
+0.3
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.2
+0.6
-0.6
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.4
-0.1
+0.7
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
+0.3
-0.1
+0.4
auxotrophy
YNB Glucose
+0.3
-0.0
+0.6
-0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
+0.6
-0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.4
+0.4
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.1
+0.8
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.4
+0.7
+0.0
-0.2
auxotrophy
Dropout Complete
+0.7
+0.2
+0.7
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.5
+2.2
+0.5
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.2
+2.4
+0.6
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.3
+3.0
+0.7
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.6
+2.6
+0.6
+0.1
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