Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 15761 and 15762 are separated by 952 nucleotides15762 and 15763 are separated by 238 nucleotides15763 and 15764 are separated by 434 nucleotides15764 and 15765 are separated by 191 nucleotides mRNA_7393: 15761 - HMMPfam-Velvet factor-PF11754, at 172,471 to 174,336 15761 mRNA_7394: 15762 - KOG0569 Permease of the major facilitator superfamily, at 175,289 to 177,598 15762 mRNA_7395: 15763 - HMMPfam-ER membrane protein SH3-PF08229,SMART-ER membrane protein SH3-SM00786, at 177,837 to 178,751 15763 mRNA_7396: 15764 - K18584 ACTR3, ARP3 actin-related protein 3, at 179,186 to 180,946 15764 mRNA_7397: 15765 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 181,138 to 183,665 15765
Group Condition mRNA_7393 mRNA_7394 mRNA_7395 mRNA_7396 mRNA_7397
15761 15762 15763 15764 15765
ypd buoyancy 40 hrs No Buoyancy Separation -0.5 -1.6 -0.1 -2.2 -0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.6 -0.3 -0.4 -2.7 +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.5 -0.7 -1.0 +0.1 -0.1
ypd buoyancy 40 hrs Low Buoyancy +0.1 +0.1 -0.6 -0.6 +0.0
growth on ricinoleic acid YNB Ricinoleic Acid -0.5 +0.0 +0.4 -0.5 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate -0.0 -0.5 -1.0 +0.9 +0.0
auxotrophy Dropout Complete -0.0 -0.1 -0.4 +0.3 -0.2
auxotrophy YNB Glucose 75mM Arginine +0.2 -0.1 -0.3 +0.1 -0.1
auxotrophy YNB Glucose -0.0 -0.2 -0.1 +0.4 -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.1 +0.4 -0.0 -0.4 +0.2
facs on lipid accumulation Sorted No BODIPY Gate +0.1 -0.0 -0.3 +0.5 -0.2
auxotrophy YNB Glucose 75mM Methionine +0.0 -0.2 -0.2 +0.7 -0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.7 -0.1 -0.3 +0.1 -0.2
ypd buoyancy 40 hrs High Buoyancy -0.1 +0.4 +0.2 -0.1 +0.1
growth on oleic acid YNB Glucose +0.1 +0.1 +0.2 +0.4 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.6 +0.1 +0.0 +0.0 -0.1
growth on oleic acid YNB Oleic Acid +0.0 +0.1 +0.4 +0.3 -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 -0.2 +0.3 +1.1 -0.3
growth on ricinoleic acid YNB Glucose -0.6 +0.0 +0.7 +0.9 -0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.7 -0.1 +0.5 +0.7 -0.4
growth on ypd YPD +0.7 -0.5 -0.3 +1.4 +0.2
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