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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15763 and 15764 are separated by 434 nucleotides
15764 and 15765 are separated by 191 nucleotides
15765 and 15766 are separated by 483 nucleotides
15766 and 15767 are separated by 283 nucleotides
mRNA_7395: 15763 - HMMPfam-ER membrane protein SH3-PF08229,SMART-ER membrane protein SH3-SM00786, at 177,837 to 178,751
15763
mRNA_7396: 15764 - K18584 ACTR3, ARP3 actin-related protein 3, at 179,186 to 180,946
15764
mRNA_7397: 15765 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 181,138 to 183,665
15765
mRNA_7398: 15766 - KOG0266 WD40 repeat-containing protein, at 184,149 to 185,888
15766
mRNA_7399: 15767 - K12859 TXNL4A, DIB1 U5 snRNP protein, DIM1 family, at 186,172 to 187,240
15767
Group
Condition
mRNA
_7395
mRNA
_7396
mRNA
_7397
mRNA
_7398
mRNA
_7399
15763
15764
15765
15766
15767
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-2.7
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-2.2
-0.0
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.6
-0.6
+0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.0
+0.1
-0.1
+0.2
N.D.
auxotrophy
Dropout Complete
-0.4
+0.3
-0.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
-0.1
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.5
-0.2
-0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.5
-0.2
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.1
-0.2
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
+0.9
+0.0
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.4
+0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.0
-0.1
+0.0
N.D.
auxotrophy
YNB Glucose
-0.1
+0.4
-0.1
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.7
-0.0
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.4
+0.3
-0.2
-0.2
N.D.
growth on oleic acid
YNB Glucose
+0.2
+0.4
-0.2
-0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
+0.1
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.7
-0.4
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+1.1
-0.3
+0.0
N.D.
growth on ypd
YPD
-0.3
+1.4
+0.2
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.7
+0.9
-0.1
+0.1
N.D.
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